Table 1.
Details of non-classically secreted protein (CSP) prediction programs, as of April 2016.
| Prediction tool | Reference | Target1 | Method2 | Number of predictions3 | Available4 | Citations5 |
|---|---|---|---|---|---|---|
| SecretomeP (v1) | Bendtsen et al., 2004 | M | W, D | 500 (W), - (D) | Yes | 642 |
| SecretomeP (v2) | Bendtsen et al., 2005 | B | W | 100 | Yes | 342 |
| SecretP (v1) | Yu et al., 2010b | M | W | 1 | Error | 17 |
| SecretP(v2) | Yu et al., 2010a | M, B | W | 1 | Error | 76 |
| SecretP (v2.1) | Yu et al., 2013 | G- | W | 1 | Error | 3 |
| SPRED | Kandaswamy et al., 2010 | M | D | - | Yes | 15 |
| SRTpred | Garg and Raghava, 2008 | M | W | 1 | Yes | 35 |
| Sec-GO | Huang, 2012 | M, B | W | ? | No | 7 |
| NClassG+ | Restrepo-Montoya et al., 2011 | G+ | W | ? | No | 6 |
1Target: (M)ammalian, (B)acteria, (G+) Gram-positive bacteria, (G-) Gram-negative bacteria. 2Method: (W)ebserver, (D)ownload. 3Number of sequences that can predicted in a single run, - indicating no limit. 4Available refers to web server or program availability at the published location. Error indicates where the program is available but not operational. 5Citation counts from Google Scholar (http://scholar.google.com) as of April 2016.