Figure 2. Density plots of selected genes from the T-cell data.

The densities are displayed for the original (red), scLVM corrected (green) and ccRemover corrected (blue) data. The genes were selected from among the top ranked genes on Cyclebase. The original data displays bimodal densities which are common in scRNA-Seq data indicating genes whose expression switches on and off. When the cell-cycle effect is removed using ccRemover or scLVM these bimodal densities disappear.