| A2MP | α-2-macroglobulin-P |
| ACAA1A | 3-ketoacyl-CoA thiolase A |
| AHCY | adenosylhomocysteinase |
| AHSA2 | activator of 90 kDa heat shock protein ATPase homolog 2 |
| AKT3 | RAC-α serine/threonine-protein kinase 3 |
| ALDH2 | aldehyde dehydrogenase, mitochondrial |
| ANAPC2 | anaphase-promoting complex subunit 2 |
| ARF6 | ADP ribosylation factor 6 |
| ARFGAP | ADP-ribosylation factor GTPase-activating protein |
| ARHGEF6 | ρ guanine nucleotide exchange factor 6 |
| ASAP2 | Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 |
| CALR | Calreticulin |
| CBL | E3 ubiquitin-protein ligase CBL |
| CBLB | E3 ubiquitin-protein ligase CBL B |
| CCND1 | G1/S-specific cyclin-D1 |
| CCT | chaperonin containing TCP1 |
| CDK1 | cyclin-dependent kinase 1 |
| CFL1 | cofilin-1 |
| CHMP | charged multivesicular body protein |
| CHP | calcineurin B homologous protein 1 |
| CLTA | clathrin light chain A |
| CSF1R | macrophage colony-stimulating factor 1 receptor |
| DNM | dynamin |
| CTSB | cathepsin B; |
| DNM2 | dynamin 2 |
| DNM1L | dynamin-1-like protein |
| EDIL3 | EGF-like repeat and discoidin I-like domain-containing protein 3 |
| EHD | EH domain-containing protein |
| ENS | endocytosis |
| ER | endoplasmic reticulum |
| ESI | electrospray ion |
| EV71 | enterovirus 71 |
| EVP1 | EV71 VP1 subunit |
| FCGR1 | high affinity immunoglobulin gamma Fc receptor I |
| FDPS | farnesyl pyrophosphate synthase |
| FLNA | filamin-A |
| FLT1 | vascular endothelial growth factor receptor 1 |
| GM1 | ganglioside M1 |
| GSTO1 | glutathione S-transferase ω-1 |
| HERC4 | probable E3 ubiquitin-protein ligase HERC4 |
| HFMD | hand-foot-and-mouth disease |
| HIST1H1E | histone H1E |
| HSPA4 | heat shock 70 kDa protein 4 |
| IFI35 | interferon-induced 35 kDa protein |
| IQSEC1 | IQ motif and SEC7 domain-containing protein 1 |
| ISRE | IFN-stimulated response element |
| iTRAQ | isobaric tags for relative and absolute quantitation |
| MS | mass spectrometry |
| JAK | Janus kinase |
| KLHL9 | kelch-like protein 9 |
| LAMP-1 | Lysosome-associated membrane glycoprotein 1 |
| LC-MS | liquid chromatography-tandem mass spectrometry |
| LT | heat-labile toxin |
| LTB | B subunits of LT |
| MAPK | mitogen-activated protein kinase |
| NFATC2 | nuclear factor of activated T-cells, cytoplasmic |
| NFKB1 | nuclear factor NF-κB p105 subunit |
| OAS1A | 2′-5′-oligoadenylate synthase 1A |
| PANTHER | protein annotation through evolutionary relationship |
| PIAS4 | E3 SUMO-protein ligase PIAS1 |
| PPIL2 | peptidyl-prolyl cis-trans isomerase-like 2 |
| PPM1A | protein phosphatase 1A |
| PTPN7 | tyrosine-protein phosphatase non-receptor type 7 |
| Q-TOF-MS | source for quadrupole time-of-flight mass spectrometry |
| RAB5A | Ras-related protein Rab-5A |
| RAP1B | Ras-related protein Rap-1b |
| PRSS1 | protease serine 1 |
| ROS | reactive oxygen species |
| SLC11 | solute carrier 11 |
| SLFN | schlafen |
| SRC | proto-oncogene tyrosine-protein kinase |
| STAM2 | signal transducing adapter molecule 2 |
| STAT | signal transducers and activators of transcription |
| STAU2 | double-stranded RNA-binding protein Staufen homolog 2 |
| SWAP70 | switch-associated protein 70 |
| TCP1 | t-complex protein 1 |
| TGFB1 | transforming growth factor β-1 |
| UBE2R2 | ubiquitin-conjugating enzyme E2 R2 |
| UBMP | ubiquitin mediated proteolysis pathway |
| VPS | vacuolar protein sorting-associated protein |
| WWP2 | NEDD4-like E3 ubiquitin-protein ligase WWP2 |
| XIAP | E3 ubiquitin-protein ligase XIAP |
| ZFYVE9 | Zinc finger FYVE domain-containing protein 9 |