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. 2016 Sep 23;60(10):5817–5827. doi: 10.1128/AAC.00873-16

TABLE 2.

Data collection and refinement statistics of crystal structures

Parametera Values(s) forb:
Apo-CmLeuRS CP1 CmLeuRS CP1 + Nva2AA CmLeuRS CP1 + Ile2AA CmLeuRS CP1 + AN6426-AMP
Data collection statistics
    Beam line Soleil, France ESRF, France (ID23-1) SSRF, China Soleil, France
    Space group P41212 P41212 P43212 P43212
    Cell dimensions
        a, b, c (Å) 107.71, 107.71, 311.20 107.73, 107.73, 309.51 64.93, 64.93, 167.25 65.07, 65.07, 167.30
        α, β, γ (°) 90.00, 90.00, 90.00 90.00, 90.00, 90.00 90.00, 90.00, 90.00 90.00, 90.00, 90.00
    Resolution (Å) 48–2.70 (2.70–2.84) 48–2.30 (2.30–2.36) 50–1.76 (1.76–1.79) 60–2.10 (2.10–2.21)
    Rsym 4.8 (93.4) 11.3 (129.0) 17.2 (121.0) 4.4 (47.3)
    II 30.3 (2.7) 16.5 (1.9) 19.5 (2.1) 29.2 (5.6)
    Completeness (%) 99.8 (99.0) 99.9 (99.3) 99.7 (95.3) 99.9 (99.4)
    Redundancy 8.7 (9.0) 8.1 (7.9) 23.8 (18.6) 10.4 (10.6)
Refinement statistics
    Resolution (Å) 2.7 2.3 1.7 2.10
    No. of reflections work/free 48,772/2,609 77,686/4,014 29,524/1,573 20,768/1,122
    Rwork/Rfree 0.209/0.253 0.201/0.236 0.196/0.232 0.200/0.238
    No. of:
        Protein atoms 8,683c 8,892c 2,235 2,185
        Ligands 104d 27e 38f
        Ions 2 (K+) 10 (2× PO42−) 5 (PO42−)
        Water molecules/other 71 371/16g 232 51
    B factor
        Protein 90.1 47.2 24.3 54.9
        Ligand 64.3 17.3 50.5
        Ions 43.4 (K+) 46.6 (PO42−) 98.9 (PO42−)
        Water/other 65.7 42.8/50.8 (EGh) 34.8 51.6
    RMSD
        Bond lengths (Å) 0.010 0.009 0.014 0.009
        Bond angles (°) 1.41 1.38 1.67 1.61
a

Rsym=ΣhklΣj|Ihkl,jIhkl|ΣhklΣjIhkl,j, where Ihkl is the average of symmetry (or Friedel)-related observations of a unique reflection; I, intensity of a reflection.

b

Values in parentheses are for the highest-resolution shell.

c

Four subunits.

d

Four Nva2AA molecules.

e

Ile2AA.

f

AN6426-AMP.

g

Four ethylene glycol molecules.

h

EG, ethylene glycol.