Table 2. Strains and plasmids.
Strain or plasmid | Genotype or relevant phenotype * | Source or reference |
---|---|---|
E. coli | ||
DH5α | F- endA1 glnV44 thi-1 recA1 relA1 gyrA96 deoR nupG Φ80dlacZΔM15 Δ(lacZYA-argF)U169 hsdR17(rK - mK +) λ– | Invitrogen |
TOP10 | F- mcrA Δ(mrr-hsdRMS-mcrBC) Φ80lacZΔM15 ΔlacX74 nupG recA1 araD139 Δ(ara-leu)7697 galE15 galK16 rpsL(StrR) endA1 λ- | Invitrogen |
P. syringae pv. tomato | ||
DC3000 | Wild type, Rifr | |
CUCPB5115 | ∆CEL::ΩSp/Smr, Rifr Spr | [72] |
P. fluorescens | ||
EtHAn | P. fluorescens Pf0-1 carrying a working TTSS from P. syringae pv. Syringae, Cmr | [33] |
Agrobacterium tumefaciens | ||
GV3101 | Carries Vir plasmid encoding T-DNA transfer machinery, Rifr, Gmr | |
Saccharomyces cerevisiae | ||
EGY48 | MATa, his3, trp1, ura3, LexA op(x6) -LEU2 | Clontech |
AH109 | MATa, trp1-901, leu2-3, 112, ura3-52, his3-200, gal4∆, gal80∆, LYS2::GAL1 UAS -GAL1 TATA -HIS3, GAL2 UAS -GAL2 TATA -ADE2,URA3::MEL1 UAS -MEL1 TATA -lacZ | Clontech |
YTK12 | suc2Δ9 trp1Δ ade2-101 ura3-52 | [42] |
Plasmids | ||
pCR8⁄GW⁄TOPO | Gateway-compatible entry vector, Spr | Invitrogen |
pEDV6 | Gateway-compatible version of pEDV3, Gmr | [29] |
pSITEII-3C1 | Gateway-compatible binary vector for transiently over-expression of EGFP-fused protein in planta, Smr | [73] |
pBI121 | Binary vector for transformation in plant, Kmr in bacteria, Kmr in plants | [74] |
pSuc2t7M13ori | Yeast signal sequence trap vector, Ampr in bacteria, -Trp in yeast | [42] |
pLexA | Bait plasmid for yeast LexA two-hybrid system containing BD domain, Ampr in bacteria, -His in yeast | Clontech |
pB42AD | Library plasmid for yeast LexA two-hybrid system containing AD domain, Ampr in bacteria, -Trp in yeast | Clontech |
P8op-lacZ | LacZ reporter plasmid for yeast LexA two-hybrid system, Ampr in bacteria, -Ura in yeast | Clontech |
pGBKT7 | Protein expression plasmid for yeast Gal4 two-hybrid system containing BD domain, Kmr in bacteria, -Trp in yeast | Clontech |
pGADT7 | Protein expression plasmid for yeast Gal4 two-hybrid system containing AD domain, Ampr in bacteria, -Leu in yeast | Clontech |
pSPYNE-35S | BiFC plasmid containing YFP N-terminal fragment fused to the C-terminus of insertion, Kmr in bacteria, Kmr in plants | [47] |
pSPYCE-35S | BiFC plasmid containing YFP C-terminal fragment fused to the C-terminus of insertion, Kmr in bacteria, Barr in plants | [47] |
phygII-SPYNE(R)155 | BiFC plasmid containing eYFP N-terminal fragment fused to the N-terminus of insertion, Kmr in bacteria, Hygr in plants | [75] |
pkanII-VYCE(R) | BiFC plasmid containing Venus C-terminal fragment fused to the N-terminus of insertion, Kmr in bacteria, Kmr in plants | [75] |
pBPMV-IA-V2 | BPMV-based gene silencing vector, Ampr | [50] |
pYL192 | TRV-based gene silencing vector, containing TRV RNA1, Kmr in bacteria, Kmr in plants | [52] |
pYL279 | TRV-based gene silencing vector, containing TRV RNA2-Gateway cassette, Kmr in bacteria, Kmr in plants | [53] |
pYL124 | TRV-based gene silencing positive control, containing TRV RNA2-NtPDS, Kmr in bacteria, Kmr in plants | [52] |
*: Antibiotics concentrations (μg/ml) were used as follows: Rifampicin (Rif) 100, Kanamycin (Km) 75, Gentamycin (Gm) 50, Spectinomycin (Sp) 50, Chloramphenicol (Cm) 30, Ampicillin (Amp) 100, Streptomycin (Sm) 100, Hygromycin B (Hyg) 30 and Basta (Bas) 100.