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. 2016 Sep 27;12(9):e1005827. doi: 10.1371/journal.ppat.1005827

Table 2. Strains and plasmids.

Strain or plasmid Genotype or relevant phenotype * Source or reference
E. coli
    DH5α F- endA1 glnV44 thi-1 recA1 relA1 gyrA96 deoR nupG Φ80dlacZΔM15 Δ(lacZYA-argF)U169 hsdR17(rK - mK +) λ Invitrogen
    TOP10 F- mcrA Δ(mrr-hsdRMS-mcrBC) Φ80lacZΔM15 ΔlacX74 nupG recA1 araD139 Δ(ara-leu)7697 galE15 galK16 rpsL(StrR) endA1 λ- Invitrogen
P. syringae pv. tomato
    DC3000 Wild type, Rifr
    CUCPB5115 ∆CEL::ΩSp/Smr, Rifr Spr [72]
P. fluorescens
    EtHAn P. fluorescens Pf0-1 carrying a working TTSS from P. syringae pv. Syringae, Cmr [33]
Agrobacterium tumefaciens
    GV3101 Carries Vir plasmid encoding T-DNA transfer machinery, Rifr, Gmr
Saccharomyces cerevisiae
    EGY48 MATa, his3, trp1, ura3, LexA op(x6) -LEU2 Clontech
    AH109 MATa, trp1-901, leu2-3, 112, ura3-52, his3-200, gal4∆, gal80∆, LYS2::GAL1 UAS -GAL1 TATA -HIS3, GAL2 UAS -GAL2 TATA -ADE2,URA3::MEL1 UAS -MEL1 TATA -lacZ Clontech
    YTK12 suc2Δ9 trp1Δ ade2-101 ura3-52 [42]
Plasmids
    pCR8⁄GW⁄TOPO Gateway-compatible entry vector, Spr Invitrogen
    pEDV6 Gateway-compatible version of pEDV3, Gmr [29]
    pSITEII-3C1 Gateway-compatible binary vector for transiently over-expression of EGFP-fused protein in planta, Smr [73]
    pBI121 Binary vector for transformation in plant, Kmr in bacteria, Kmr in plants [74]
    pSuc2t7M13ori Yeast signal sequence trap vector, Ampr in bacteria, -Trp in yeast [42]
    pLexA Bait plasmid for yeast LexA two-hybrid system containing BD domain, Ampr in bacteria, -His in yeast Clontech
    pB42AD Library plasmid for yeast LexA two-hybrid system containing AD domain, Ampr in bacteria, -Trp in yeast Clontech
    P8op-lacZ LacZ reporter plasmid for yeast LexA two-hybrid system, Ampr in bacteria, -Ura in yeast Clontech
    pGBKT7 Protein expression plasmid for yeast Gal4 two-hybrid system containing BD domain, Kmr in bacteria, -Trp in yeast Clontech
    pGADT7 Protein expression plasmid for yeast Gal4 two-hybrid system containing AD domain, Ampr in bacteria, -Leu in yeast Clontech
    pSPYNE-35S BiFC plasmid containing YFP N-terminal fragment fused to the C-terminus of insertion, Kmr in bacteria, Kmr in plants [47]
    pSPYCE-35S BiFC plasmid containing YFP C-terminal fragment fused to the C-terminus of insertion, Kmr in bacteria, Barr in plants [47]
    phygII-SPYNE(R)155 BiFC plasmid containing eYFP N-terminal fragment fused to the N-terminus of insertion, Kmr in bacteria, Hygr in plants [75]
    pkanII-VYCE(R) BiFC plasmid containing Venus C-terminal fragment fused to the N-terminus of insertion, Kmr in bacteria, Kmr in plants [75]
    pBPMV-IA-V2 BPMV-based gene silencing vector, Ampr [50]
    pYL192 TRV-based gene silencing vector, containing TRV RNA1, Kmr in bacteria, Kmr in plants [52]
    pYL279 TRV-based gene silencing vector, containing TRV RNA2-Gateway cassette, Kmr in bacteria, Kmr in plants [53]
    pYL124 TRV-based gene silencing positive control, containing TRV RNA2-NtPDS, Kmr in bacteria, Kmr in plants [52]

*: Antibiotics concentrations (μg/ml) were used as follows: Rifampicin (Rif) 100, Kanamycin (Km) 75, Gentamycin (Gm) 50, Spectinomycin (Sp) 50, Chloramphenicol (Cm) 30, Ampicillin (Amp) 100, Streptomycin (Sm) 100, Hygromycin B (Hyg) 30 and Basta (Bas) 100.