Table 3.
Overlap of subtype-specific RGC markers with genes from the Thy1- and the Tubb3-network.
| Subtype Marker | Top 2000 | ||
|---|---|---|---|
| Thy1 | Tubb3 | Total Overlap (of 4000) | |
| Cartpt | 1022 | 54 | 1076 (27%) |
| Jam2 | 382 | 25 | 407 (10.2%) |
| Kcng4 | 326 | 241 | 567 (14.2%) |
| Opn4 | 713 | 185 | 898 (22.5%) |
| Hoxd10 | 10 | 19 | 29 (0.7%) |
| Spp1 | 29 | 756 | 1785 (19.6%) |
| Subtype Marker | Pearson r > 0.6 | ||
| Thy1 | Tubb3 | Total Overlap (of 9982) | |
| Cartpt | 2482 | 0 | 2482 (24.9%) |
| Jam2 | 1030 | 3 | 1033 (10.3%) |
| Kcng4 | 886 | 207 | 1093 (10.9%) |
| Opn4 | 1086 | 56 | 1142 (11.4%) |
| Hoxd10 | 4 | 17 | 21 (0.2%) |
| Spp1 | 13 | 9 | 22 (0.2%) |
For the top table, the top 2000 correlates of both networks served as comparison, whereas a Pearson r cutoff of >0.6 was chosen for the lower table, corresponding to a Bonferroni-corrected value of p < 0.02.