Table 1. Genes within the autophagy pathway differentially expressed following C. concisus UNSW3 or BAA-1457 infection of intestinal epithelial cells.

Strain	Gene	Gene Description	Fold Change	Fold Regulation	P-value
UNSW3	ATG4A	ATG4 autophagy related 4 homolog A (S. cerevisiae)	0.64	−1.57	0.040
	HDAC1	Histone deacetylase 1	0.66	−1.51	0.035
	HSPA8	Heat shock 70 kDa protein 8	0.45	−2.21	0.020
	MAPK14	Mitogen-activated protein kinase 14	0.60	−1.67	0.0037
	PIK3C3	Phosphoinositide-3-kinase, class 3	0.65	−1.54	0.054
	UVRAG	UV radiation resistance associated gene	0.73	−1.36	0.077
BAA-1457	ATG4A	ATG4 autophagy related 4 homolog A (S. cerevisiae)	0.47	−2.12	0.0048
	EIF4G1	Eukaryotic translation initiation factor 4 gamma, 1	0.37	−2.70	0.021
	MAP1LC3B	Microtubule-associated protein 1 light chain 3 beta	2.63	2.63	0.0052
	MTOR	Mechanistic target of rapamycin (serine/threonine kinase)	0.52	−1.94	0.0021

Expression was determined using an autophagy-specific qPCR array.

Fold change values  < 1, fold regulation refers to the negative inverse of the fold change. When fold change is ≥1, fold regulation = fold change.