Table 1.

Summary of the sequencing data after quality control.

Sample	Raw reads	Raw base	Q20	Clean reads	Clean base	Clean rate
WLL1	52831743	7928532000	99.99%	50735720	7609666306	0.960326446
WLL1	58572433	7928532000	97.10%	44421351	6662121716	0.758400304
WLL2	103035876	15455381400	99.98%	98747743	14810817868	0.958382137
WLL2	103035876	15455381400	97.50%	87943761	13189434520	0.85352563
WLL3	47936143	7190421450	99.97%	45842678	6875831673	0.956328047
WLL3	47936143	7190421450	96.67%	39203922	5879662949	0.817836387
WLL4	55117713	8267656950	99.97%	52810671	7920931057	0.958143365
WLL4	55117713	8267656950	96.86%	45772099	6864690206	0.830442638
WLL5	42414859	6362228850	99.97%	40625314	6093303572	0.957808536
WLL5	42414859	6362228850	96.49%	34754331	5212336104	0.819390464
WLL6	52831743	7924761450	99.97%	50675720	7600736984	0.959190765
WLL6	52831743	7924761450	96.38%	43274947	6490230720	0.819108826
WLL7	54142181	8121327150	99.99%	51811388	7771187924	0.956950515
WLL7	54142181	8121327150	97.28%	44077521	6610710884	0.814106861
WLL8	58572433	8785864950	99.99%	56266066	8439365160	0.960623678
WLL8	58572433	8785864950	97.30%	48447586	7266131771	0.827139723
WLL9	42047930	6307189500	99.99%	40469826	6070080949	0.962468925
WLL9	42047930	6307189500	97.23%	34410808	5160914737	0.818371035

WLL1–3 represent the samples in the severe pneumonia; WLL4–6 represent the samples in the mild pneumonia; WLL7–9 represent the control samples. Clean rate – Clean reads/raw reads.