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. 2016 Sep 28;11(9):e0162624. doi: 10.1371/journal.pone.0162624

Table 1. List of primers used for amplification and sequencing of the 5' part of the mitochondrial COI gene.

Primer name Sequence Publication Used at
LCO1490 5'-GGTCAACAAATCATAAAGATATTGG Folmer et al. 1994 SMNS, CCDB for ZSM, ZFMK
HCO2198 5'-TAAACTTCAGGGTGACCAAAAAATCA Folmer et al. 1994 SMNS, CCDB for ZSM, ZFMK
LepF1 5'-ATTCAACCAATCATAAAGATATTGG Hebert et al. 2004 CCDB for ZSM
LepR1 5'-TAAACTTCTGGATGTCCAAAAAATCA Hebert et al. 2004 CCDB for ZSM
C_LepFolF cocktail of LepF1 and LCO1490 www.boldystem.org/index.php/Public_Primer_PrimerSearch CCDB for ZSM
C_LepFolR cocktail of LepR1 and HCO2198 www.boldystem.org/index.php/Public_Primer_PrimerSearch CCDB for ZSM
LCO1490-JJ 5'-CHACWAAYCATAAAGATATYGG Astrin & Stüben 2008 ZFMK
HCO2198-JJ 5'-AWACTTCVGGRTGVCCAAARAATCA Astrin & Stüben 2008 ZFMK
LCO1490-JJ2 5'-CHACWAAYCAYAARGAYATYGG new ZFMK
HCO2198-JJ2 5'-ANACTTCNGGRTGNCCAAARAATCA new ZFMK
LCO1490-JJ4a 5'-CNACNAAYCAYARRGAYATYGG new ZFMK
HCO2198-JJ4a 5'-AIACYTCNGGRTGICCAAARAATC new ZFMK
LCO1490-JJ4 5'-CIACIAAYCAYAARGAYATYGG new ZFMK
HCO2198-JJ4 5'-ANACTTCNGGRTGNCCAAARAATC new ZFMK

Species—also many others than arachnids—with strongly modified binding sites could usually be successfully amplified at ZFMK with a set of newly (manually) designed, highly degenerate primers (most often using combination LCO1490-JJ2 & HCO2198-JJ2). The combination LCO1490-JJ and HCO2198-JJ constitutes the standard set of primers used at ZFMK. The standard set of primers used at CCDB for ZSM was the combination C_LepFolF and C_LepFolR, a cocktail consisting of the primers listed above.