Table 3.
List of transcription factor genes with total enrichment scores among the upregulated (UR) and downregulated (DR) target genes in the rad mutant
| TF Family | Locus_ID (Annotation)a | Fold increaseb | Total enrichment score of target motifsc | |
|---|---|---|---|---|
| UR | DR | |||
| MYB | Os01g0187900 (Similar to Transcription factor MYBS2) | 2.80 | 587 | 826 |
| ERF | Os04g0547600 (Pathogenesis-related transcriptional factor and ERF domain containing protein) | 6.97 | 104 | 60 |
| Os04g0398000 (Pathogenesis-related transcriptional factor and ERF domain containing protein) | 3.86 | |||
| Os04g0550200 (Pathogenesis-related transcriptional factor and ERF domain containing protein) | 2.81 | |||
| Os01g0797600 (AP2/ERF family protein, ERF-associated EAR-motif-containing repressor, Abiotic stress response, Stress signaling, OsERF3) | 2.62 | |||
| WRKY | Os05g0571200 (Similar to WRKY transcription factor 19) | 14.59 | 61 | -- |
| Os01g0826400 (WRKY transcription facto 24) | 8.82 | |||
| Os01g0584900 (WRKY transcription factor 28-like (WRKY5) (WRKY transcription factor 77) | 5.43 | |||
| Os02g0181300 (Similar to WRKY transcription factor) | 4.60 | |||
| Os06g0649000 (Similar to WRKY transcription factor 28) | 3.84 | |||
| Os03g0758000 (Similar to WRKY transcription protein) | 3.83 | |||
| Os04g0605100 (WRKY transcription factor 68) | 3.11 | |||
| Os01g0246700 (Similar to WRKY transcription factor 1) | 2.58 | |||
| bHLH | Os06g0193400 (Similar to Helix-loop-helix protein homolog) | 2.57 | 59 | -- |
aInformation based on RAP-DB (http://rapdb.dna.affrc.go.jp/); bBased on microarray data of Takahashi et al. (2011); ctotal target motif enrichment score = sum of the % occurrences of all motif species belonging to the same TF family in the upregulated (UR) and downregulated (DR) groups of genes (refer to Tables 1 and 2)