| AGI | Arabidopsis Gene Identifier |
| GEO | Gene Expression Omnibus |
| GGM | Gaussian Graphical Model |
| IQR | Inter-quartile range |
| MI | Mutual Information |
| NASC | Nottingham Arabidopsis Stock Centre |
| NCBI | National Center for Biotechnology Information |
| NUSE | Normalized Unscaled Standard Errors |
| PCC | Pearson Correlation Coefficient |
| RLE | Relative Log Expression |
| TAIR | The Arabidopsis Information Resource |