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. 2016 Sep 5;14(4):3509–3516. doi: 10.3892/mmr.2016.5711

Table I.

The mRNA sequence of different shRNA-HDAC short fragment.

Index Primer sequence
shRNA-HDAC1-1 F: 5′-CACCGCTCCATCCGTCCAGATAACACGAATGTTATCTGGACGGATGGAGC-3′
R: 5′-AAAAGCTCCATCCGTCCAGATAACATTCGTGTTATCTGGACGGATGGAGC-3′
shRNA-HDAC1-2 F: 5′-CACCGCAAGCAGATGCAGAGATTCACGAATGAATCTCTGCATCTGCTTGC-3′
R: 5′-AAAAGCAAGCAGATGCAGAGATTCATTCGTGAATCTCTGCATCTGCTTGC-3′
shRNA-HDAC1-NC F: 5′-CACCGCAATTTTTTTTTTTGATTCACGAATGAATCAAAAAAAAAAAAATGC-3′
R: 5′-AAAAGCAATTTTTTTTTTTGATTCATTCGTGAATCAAAAAAAAAAAAATGC-3′
shRNA-HDAC2-1 F: 5′-CACCGCAGATGCAGAGATTTAATGTCGAAACATTAAATCTCTGCATCTGC-3′
R: 5′-AAAAGCAGATGCAGAGATTTAATGTTTCGACATTAAATCTCTGCATCTGC-3′
shRNA-HDAC2-2 F: 5′-CACCGGCTGGAGGATTACATCATGCCGAAGCATGATGTAATCCTCCAGCC-3′
R: 5′-AAAAGGCTGGAGGATTACATCATGCTTCGGCATGATGTAATCCTCCAGCC-3′
shRNA-HDAC2-NC F: 5′-CACCGCAATTTTTTTTTTTGATTCACGAATGAATCAAAAAAAAAAAAATGC-3′
R: 5′-AAAAGCAATTTTTTTTTTTGATTCATTCGTGAATCAAAAAAAAAAAAATGC-3′
shRNA-HDAC4-1 F: 5′-CACCGGAGCTCGTGGTACTCAAACACGAATGTTTGAGTACCACGAGCTCC-3′
R: 5′-AAAAGGAGCTCGTGGTACTCAAACATTCGTGTTTGAGTACCACGAGCTCC-3′
shRNA-HDAC4-2 F: 5′-CACCGGAACACATCAAGCACCAACACGAATGTTGGTGCTTGATGTGTTCC-3′
R: 5′-AAAAGGAACACATCAAGCACCAACATTCGTGTTGGTGCTTGATGTGTTCC-3′
shRNA-HDAC4-NC F: 5′-CACCGCAATTTTTTTTTTTGATTCACGAATGAATCAAAAAAAAAAAAATGC-3′
R: 5′-AAAAGCAATTTTTTTTTTTGATTCATTCGTGAATCAAAAAAAAAAAAATGC-3′
shRNA-HDAC6-1 F: 5′-CACCGCAATGGAAGAAGACCTAATCCGAAGATTAGGTCTTCTTCCATTGC-3′
R: 5′-AAAAGCAATGGAAGAAGACCTAATCTTCGGATTAGGTCTTCTTCCATTGC-3′
shRNA-HDAC6-2 F: 5′-CACCGGAAGAGCTGATGTTGGTTCACGAATGAACCAACATCAGCTCTTCC-3′
R: 5′-AAAAGGAAGAGCTGATGTTGGTTCATTCGTGAACCAACATCAGCTCTTCC-3′
siRNA-HDAC6-NC F: 5′-CACCGCAATTTTTTTTTTTGATTCACGAATGAATCAAAAAAAAAAAAATGC-3′
R: 5′-AAAAGCAATTTTTTTTTTTGATTCATTCGTGAATCAAAAAAAAAAAAATGC-3′
β-actin F: 5′-GTGGACATCCGCAAAGAC-3′
R: 5′-AAAGGGTGTAACGCAACTA-3′

shRNA, short hairpin RNA; HDAC, histone deacetylase; NC, negative control; F, forward; R, reverse.