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. 2016 Jul 8;3(7-8):220–241. doi: 10.18632/oncoscience.313

Table 1. Identified proteins from tumoral and non tumoral prostate tissue by MS/MS data processinga.

Accession Numberb Gene Nameb Protein Nameb IPc MW(Da)c Locationb Biological Processes and Molecular Functionb Quantification 117:115a
1. P63104 YWHAZ 14-3-3 protein zeta/delta* 473 27745 cytoplasm adapter protein implicated in the regulation of signaling pathways negative regulation of apoptotic process 380
2. Q9P2A4 ABI3 ABI gene family member 3 499 39035 cytoplasm regulation of cell migration 180
3. P68032 ACTC1 Actin alpha cardiac muscle 1* 523 42019 cytoskeleton cell structure and motility 227
4. P25054 APC Adenomatous polyposis coli protein* 793 311646 cytoplasm signal transduction oncogenesis beta-catenin binding, protein kinase regulator activity 292
5. O95996 APC2 Adenomatous polyposis coli protein 2 908 243949 cytoplasm and cell membrane promotes rapid degradation of CTNNB1 and may function as a tumor suppressor May function in Wnt signaling 358
6. Q08462 ADCY2 Adenylate cyclase* 840 123603 Citoplasm/membrane membrane-bound and Adenylate cyclase activity 320
7. P51825 AFF1 AF4/FMR2 family member 1* 926 131422 nucleus oncogene transcription factor- 237
8. P10696 ALPPL2 Alkaline phosphatase placental-like 590 57377 membrane hydrolase with biological process unclassified 145
9. Q99490 AGAP2 Arf-GAP with GTPase ANK repeat and PH domain-containing protein 2* 991 124674 cytoplasm and nucleus protein transport oncogenic overexpressed in cancer cells prevents apoptosis and promotes cancer cell invasion 302
10. Q8TF01 PNSIR Arginine/serine-rich protein PNISR* 1002 92577 Nucleus cytoplasm transcription system 159
11. O14525 ASTN1 Astrotactin 1 (Fragment) * 509 144913 membrane cell adhesion 255
12. Q4LE39 ARID4B AT-rich interactive domain-containing protein 4B* 504 147809 Nucleus and cytoplasm transcriptional repressor 217
13. O75815 BCAR3 Breast cancer anti estrogen resistance protein 3 819 92566 intracellular guanine nucleotide responsive factor signal trasduction 721
14. Q9UIF8 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B* 613 240459 nucleus transcriptional regulation 164
15. Q9NYQ7 CELSR3 Cadherin EGF LAG seven-pass G-type receptor 3 623 358185 cell membrane cell signaling receptor 295
16. O15484 CAPN5 Calpain-5* 757 73169 cell surface hydrolase involved in protein metabolism and modification 116
17. Q66K79 CPZ Carboxypeptidase Z precursor * 822 73655 Secreted) extracellular space metalloprotease biological process unclassified 389
18. P35222 CTNNB1 Catenin beta-1* 553 85497 cytoplasm nucleus cell membrane cell adhesion transcription regulation and oncogenesis 210
19. Q96P48 ARAP1 Centaurin-delta-2 586 162192 Golgi apparatus membrane cytoplasm GTPase activation 578
20. Q9HC77 CENPJ Centromere protein J* 623 153000 Cytoplasm cytoskeleton plays an important role in cell division and centrosome function 159
21. O14647 CHD2 Chromodomain-helicase-DNA-binding protein 2 (CHD-2) * 822 211344 nucleus transcription regulation DNA-binding helicase 149
22. Q8TD26 CDH6 Chromodomain-helicase-DNA-binding protein 6* 590 305412 nucleus transcription regulator 353
23. Q02388 COL7A1 Collagen alpha 1(VII) * 595 295220 secreted extracellular space extracellular matrix structural constituent 207
24. P08123 COL1A2 Collagen alpha 2(I) chain* *** 908 129314 secreted extracellular space extracellular matrix structural constituent 319
25. P08572 COL4A2 Collagen alpha 2(IV) chain* 885 167553 secreted extracellular space extracellular matrix structural constituent 312
26. P12277 CKB Creatine kinase B-type* 535 42644 cytoplasm central role in energy transduction in tissues 449
27. Q9P0U4 CXXC1 CXXC-type zinc finger protein 1 861 75712 nucleus transcription regulation 110
28. Q9NZJ0 DTL Denticleless protein homolog 911 79468 Nucleus and cytoplasm cell cycle control DNA damage response and translation DNA synthesis 314
29. P17661 DES Desmin * 521 53536 cytoplasm cytoskeletal protein binding muscle protein 378
30. Q08554 DSC1 Desmocollin 1A/1B precursor 525 99987 cell membrane cell adhesion-mediated signaling 255
31. Q14117 DPYS Dihydropyrimidinase * 681 56630 cytoplasm nucleoside nucleotide and nucleic acid metabolism 630
32. Q9Y485 DMXL1 DmX-like 1 protein * 591 337839 extracellular space unknown 614
33. Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 951 52993 Cytoplasm and nucleus transcription repression and activation 227
34. Q92878 RAD50 DNA repair protein RAD50* 647 153892 nucleus hydrolase 401
35. O60870 KIN DNA/RNA-binding protein KIN17 907 45374 nucleus and cytoplasm involved in DNA replication and the cellular response to DNA damage 050
36. Q8TD84 DSCAML1 Down syndrome cell adhesion molecule-like protein 1* 843 224463 cell membrane cell adhesion and neurogenesis 380
37. Q96DT5 DNAH11 Dynein heavy chain 11 axonemal* 603 521043 cytoplasm force generating protein of respiratory cilia produces force towards the minus ends of microtubules and has ATPase activity 492
38. Q8WXX0 DNAH7 Dynein heavy chain 7 axonemal * 570 461159 cytoplasm cytoskeleton microtubule force generating protein of respiratory cilia produces force towards the minus ends of microtubules and has ATPase activity 443
39. Q03001 DST Dystonin* 514 860662 cytoplasm and cytoskeleton integrator of intermediate filaments involved in actin and microtubule cytoskeleton networks 428
40. P14625 HSP90B1 Endoplasmin* 476 92469 endoplasmic reticulum molecular chaperone 391
41. Q96J88 EPSTI1 epithelial stromal interaction protein 1 990 36793 unspecified unknown 265
42. Q8TAM0 GPR62 G protein-coupled receptor 62* 1099 37619 Cell membrane G-protein coupled receptor 301
43. O94808 GFPT2 Glucosamine-fructose-6-phosphate aminotransferase [isomerizing] 2 703 76931 cytosol aminotransferase 224
44. Q6PCE3 PGM2L1 Glucose 16-bisphoshate syntase 681 70442 cytosol glucose metabolism isomerase and transferase 303
45. P30711 GSTT1 Glutathione S-transferase theta 1* 701 27335 cytoplasm glutathione transferase activity 173
46. Q9NU53 GINM1 Glycoprotein integral membrane protein 1 481 36840 membrane unspecified 127
47. Q14789 GOLGB1 Golgin subfamily B member 1* 496 376019 Golgi apparatus and membrane unknown 050
48. Q99062 CSF3R Granulocyte colony stimulating factor receptor* 576 92156 cell membrane receptor 354
49. Q03113 GNA12 Guanine nucleotide- binding protein subunit alpha-12* 984 44279 membrane modulators or transducers in various trans-membrane signaling systems controller of cell migration through the TOR signaling cascade 379
50. Q96LI6 HSFY1 Heat shock transcription factor Y-linked 668 45107 nucleus cytoplasm transcription regulation 110
51. P69905 HBA1 Hemoglobin subunit alpha 872 15258 cytosol oxygen transporter 497
52. P68871 HBB Hemoglobin subunit Beta 674 15998 cytosol oxygen transporter 271
53. P09105 HBQ1 Hemoglobin subunit theta-1 709 15508 cytosol oxygen transporter 288
54. Q8TEK3 DOT1L Histone-lysine N-methyltransferase H3 lysine-79 specific * 939 184853 nucleus chromatin regulator 304
55. P17482 HOXB9 Homeobox protein Hox-B9* 901 28059 nucleus sequence-specific transcription factor 249
56. Q9HAS2 HIPK3 Homeodomain-interacting protein kinase 3* 716 133743 cytoplasm and nucleus serine/threonine-protein kinase involved in transcription regulation apoptosis and steroidogenic 907
57. P42858 HTT Huntingtin 581 347603 cytoplasm and nucleus may play a role in microtubule-mediated transport or vesicle function Protein binding 388
58. Q9Y4L1 HYOU1 Hypoxia up-regulated protein 1* 516 111335 nucleus protein metabolism and modification 229
59. P23677 ITPKA Inositol 145-trisphosphate 3-kinase A 759 51009 cytosol kinase 299
60. O15503 INSIG1 Insulin-induced protein 1* 908 29987 endoplasmic reticulum membrane protein binding may play a role in growth and differentiation of tissues involved in metabolic control and has a regulatory role during G0/G1 transition of cell growth 098
61. P24593 IGFBP5 Insulin-like growth factor binding protein 5 precursor* 858 30570 secreted signal transduction and cellular protein metabolic process 306
62. Q9BR39 JPH2 Junctophilin 2 882 74222 cell membrane contribute to the formation of junctional membrane complexes and to the construction of skeletal muscle triad junctions 477
63. Q01546 KRT76 Keratin type II cytoskeletal 2 oral 838 65841 cytoskeletal cell structure and motility 293
64. Q96L93 KIF16B Kinesin-like protein KIF-16B* 586 152011 cytoplasm motor protein involved in endosome transport and receptor recycling and degradation 456
65. Q8N4N8 KIF2B Kinesin-like protein KIF2B* 889 76254 cytoplasm motor protein required for spindle assembly and chromosome movement 470
66. Q32MZ4 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1* 459 89253 nucleus and cytoplasm transcriptional repressor 381
67. Q9UNZ5 C19orf53 Leydig cell tumor 10 kDa protein homolog 1155 10577 nucleus potential role in hyper-calcemia of malignancy 449
68. Q9H2C1 LHX5 LIM/homeobox protein Lhx5 787 44406 nucleus transcription regulation 412
69. O75334 PPFIA2 Liprin-alpha2* 580 143291 cytoplasm and cell surface protein binding 261
70. Q9NZR2 LRP1B Low-density lipoprotein receptor-related protein 1B* 509 515498 membrane cell surface proteins involved in endocytosis 261
71. Q9H239 MMP28 Matrix metalloproteinase-28 970 58939 Secreted/extracellular space could play a role in tissues homeostasis and repair 282
72. Q9NR99 MXRA5 Matrix-remodeling-associated protein 5* 857 312150 secreted unknown but it is overexpressed in centenarians 332
73. Q96JG8 MAGED4 Melanoma-associated antigen D4 634 81378 unspecified tumor antigen 214
74. Q8NFU7 TET1 Methylcytosine dioxygenase TET1* 853 235309 nucleus transcription regulation activator and regulator 067
75. P11137 MAP2 Microtubule-associated protein 2* 482 199526 cytoplasm may stabilize the microtubules against depolymerization 272
76. Q9NU22 MDN1 Midasin* 546 632820 nucleus nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits 449
77. P08235 NR3C2 Mineralocorticoid receptor (MR) * 722 107067 cytoplasm nucleus endoplasmic reticulum membrane nuclear hormone receptor and transcription factor 262
78. O60336 MAPKBP1 Mitogen-activated protein kinase-binding protein 1 631 163818 unknown involved in JNK signaling pathway 500
79. Q8WV50 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta* 520 119545 cytoplasm nucleus cytoskeleton essential component of the mitotic checkpoint with kinase activity 237
80. P02686 MBP Myelin basic protein * 979 33117 peripheral membrane protein formation and stabilization of myelin membrane 262
81. P60660 MYL6 Myosin light polypeptide 6 446 16961 cytoskeleton muscle protein 213
82. P35749 MYH11 Myosin-11* 542 227339 Cytoskeleton and cytosol muscle contraction 227
83. Q9UKX3 MYH13 Myosin-13* 553 223605 cytoplasm muscle contraction 693
84. Q8WXH0 SYNE2 Nesprin-2* 526 796442 ubiquitous involved in the maintenance of nuclear organization and structural integrity 191
85. Q8NF91 SYNE1 Nesprin-1* 537 1011086 Nuclear cytoplasm cytoskeleton and membrane involved in the maintenance of nuclear organization and structural integrity 222
86. Q9ULB1 NRXN1 Neurexin-1* 561 161883 cell membrane cell surface protein involved in cell-cell-interactions exocytosis of secretory granules and regulation of signal transmission 416
87. Q8NFP9 NBEA Neurobeachin* 578 327822 cytoplasm and peripheral membrane protein localization anchoring/targeting kinase A to the membrane 359
88. Q6KC79 NIPBL Nipped-B-like protein * 809 316051 nucleus involved in sister chromatid cohesion 236
89. P04198 MYCN N-myc proto-oncogene protein* 545 49561 nucleus transcription factor proto-oncogene 146
90. P23497 SP100 Nuclear autoantigen Sp-100 483 53768 nucleus and cytoplasm transcription regulation and tumor suppressor 168
91. Q15788 NCOA1 Nuclear receptor coactivator 1* 583 156757 nucleus binds nuclear receptors and stimulates the transcriptional activities in a hormone-dependent fashion Involved in the coactivation of different nuclear receptors and mediated by STAT3 STAT5A STAT5B and STAT6 transcription factors 292
92. O00482 NR5A2 Nuclear receptor subfamily 5 group A member 2* 808 61331 nucleus transcription regulation 237
93. Q5VST9 OBSCN Obscurin* 569 868484 cytoplasm involved in miofibrillogenesis 225
94. Q9C0B5 ZDHHC5 Palmithoyltransferase ZDHHC5 917 77545 cell membrane acyltrasferase 202
95. P54317 PNLIPRP2 Pancreatic lipase-related protein 2 527 51947 secreted lipid metabolism and degradation 173
96. Q8NG07 PNMA1 Paraneoplastic antigen Ma1 478 39761 nucleus and cytoplasmic in tumor cells paraneoplastic antigen 408
97. O15018 PDZD2 PDZ domain-containing protein* 818 280092 nucleus cytoplasm and endoplasmic reticulum cell adhesion 381
98. O95613 PCNT Pericentrin* 540 378037 cytoplasm protein binding 447
99. Q5VV67 PPRC1 Peroxisome proliferator-activated receptor gamma coactivator-related protein 1* 611 177544 nucleus acts as a coactivator during transcriptional activation of nuclear genes related to mitochondrial biogenesis and cell growth 176
100. O00541 PES1 Pescadillo homolog 1 693 68003 nucleus ribosome biogenesis and rRNA processing 189
101. P15259 PGAM2 Phosphoglycerate mutase 899 28766 nucleus cytosol involved in glycolysis and gluconeogenesis 316
102. P16284 PECAM1 Platelet endothelial cell adesion molecular 655 82536 cell membrane protein binding 399
103. Q9HAU0 PLEKHA5 Pleckstrin homology domain-containing family A member 5* 720 127464 cytoplasm protein binding 294
104. Q15149 PLEC Plectin* 574 531791 cytoplasm ankyrin binding and apotoptic process 258
105. Q9NS40 KCNH7 Potassium voltage-gated channel subfamily H member 7* 757 135000 membrane pore-forming (alpha) subunit of voltage-gated potassium channel 067
106. Q7L014 DDX46 Probable ATP-dependent RNA helicase DDX46 933 117362 nucleus nucleoside nucleotide and nucleic acid metabolism 178
107. Q7Z7M1 ADGRD2 Probable G-protein coupled receptor 144* 833 104087 cell membrane G-protein coupled receptor transducer 681
108. P35232 PHB Prohibitin 557 29804 Membrane and cytoplasm DNA replication cell proliferation and differentiation proto- oncogene 347
109. P27918 CFP properdin 833 51276 Secreted immunity and defense 497
110. Q13258 PTGDR Prostaglandin D2 receptor* 939 40271 cell membrane receptor for prostaglandin D2 282
111. Q9P2B2 PTGFRN Prostaglandin F2 receptor negative regulator* 616 98556 endoplasmic reticulum membrane protein binding 213
112. P14921 ETS1 Protein C-ets-1* 503 50408 nucleus and cytoplasm transcription factor 352
113. P80511 S100A12 Protein S100-A12* 581 10575 Cytoplasm and cell membrane signal transduction inflammatory processes and immune response 341
114. A3KN83 SBNO1 Protein strawberry notch homolog 1* 796 154312 nucleus regulation of transcription 412
115. Q13882 PTK6 Protein-tyrosine kinase 6* 656 51834 cytoplasm and nucleus involved in protein metabolism and modification implicated in the regulation of a variety of signaling pathways that control the differentiation and maintenance of normal epithelia as well as tumor growth 479
116. Q9Y315 DERA Putative deoxyribose-phosphate aldolase * 908 35231 cytoplasm lyase 189
117. Q15311 RALBP1 RalA-binding protein 1* 568 76063 membrane signal transduction and ATP catabolic process 213
118. Q08999 RBL2 Retinoblastoma-like protein 2* 727 128367 nucleus transcription factor 338
119. Q7Z5J4 RAI1 Retinoid-acid induced protein 1* 903 203352 cytoplasm and nucleus transcriptional regulator 229
120. Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 785 217331 peripheral membrane protein GTPase-activating protein 248
121. Q9BST9 RTKN Rhotekin 718 62667 nucleoplasm mediates Rho signaling to activate NF-kappa-B and increases resistance to apoptosis 276
122. Q14137 BOP1 Ribosome biogenesis protein BOP1 580 83630 nucleus ribosome biogenesis, rRNA processing 489
123. Q9H7B2 RPF2 Ribosome production factor 2 homolog* 1000 35583 nucleus poly(A) RNA binding 451
124. Q8WV20 RBMS1 RNA binding motif single stranded interacting protein 1 891 44505 nucleus nucleoside nucleotide and nucleic acid metabolism 607
125. P21817 RYR1 Ryanodine receptor 1* 518 565176 sarcoplasmic reticulum membrane calcium transport 484
126. O14641 DVL2 Segment polarity protein dishevelled homolog DVL-2* 567 78948 cell membrane and cytoplasm Wnt signaling pathway 379
127. Q99719 SEPT5 Septin-5 621 42777 cytoplasm GTO and protein binding 249
128. Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2* 1205 299615 nucleus pre-mRNA processing and mRNA splicing 237
129. P15056 BRAF Serine/Threonine protein kinase B-raf* 729 84437 nucleus and cytoplasm proto-oncogene 394
130. Q06190 PPP2R3A Serine/threonine-protein phosphatase 2A regulatory subunit B’’ subunit alpha 509 130278 Colocalized with protein phosphatase type 2A complex calcium ion and protein binding and regulator of Wnt signaling pathway 290
131. P42345 MTOR Serine/threonine-protein kinase mTOR* 673 288892 ubiquitous it is a central regulator of cellular metabolism growth and survival in response to hormones growth factors nutrients energy and stress signals 257
132. Q96Q15 SMG1 Serine/threonine-protein kinase SMG1* 603 410501 nucleus and cytoplasm kinase involved in mRNA surveillance and genotoxic stress response pathways 379
133. Q15464 SHB SH2 domain-containig adapter protein B 910 55042 cytoplasm involved in angiogenesis and apoptosis 225
134. Q9H1V8 SLC6A17 Sodium-dependent neutral amino acid transporter SLC6A17 568 81001 cytoplasmic vesicle multi-pass membrane protein neurotransmitter transporter 201
135. Q96BI1 SLC22A18 Solute Carrier Family 22 member 18 662 13354 cell membrane zinc ion binding 236
136. O94956 SLCO2B1 Solute carrier organic anion transporter family member 2B1* 870 76711 cell membrane ion transport 171
137. P11277 SPTB Spectrin beta chain erythrocytic* 515 246468 cytoplasm cell structure and motility 127
138. Q9BPZ7 MAPKAP1 Stress-activated map kinase interacting protein 1 724 59123 cell membrane and nucleus stress response and phosphatidic acid binding 463
139. Q15431 SYCP1 Synaptonemal complex protein 1* 578 114192 Nucleus and chromosome cell cycle and meiosis 342
140. Q9BQ70 TCF25 Transcription factor 25* 595 76667 nucleus transcriptional repressor 406
141. Q01664 TFAP4 Transcription factor AP-4 563 38726 nucleus transcription regulator 348
142. Q8NHW3 MAFA Transcription factor mammalian MafA* 749 36982 nucleus transcriptional factor 941
143. Q8NEM7 SUPT20H Transcription factor SPT20 homolog 877 85789 nucleus required for MAP kinase p38 (MAPK11 MAPK12 MAPK13 and/or MAPK14) 421
144. P29084 GTF2E2 Transcription initiation factor IIE subunit beta 966 33044 nucleus basal transcription factor 227
145. O75410 TACC1 Transforming acidic coiled-coil-containing protein 1* 481 87794 cytoplasm and nucleus cell cycle and division 555
146. Q01995 TAGLN Transgelin* 887 22611 cytoplasm muscle protein 099
147. Q9UJA5 TRTM6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 718 55799 nucleus tRNA processing 205
148. Q9NYL9 TMOD3 Tropomodulin-3 508 39595 cytoplasm blocks the elongation and de-polymerization of the actin filaments 122
149. P06753 TPM3 Tropomyosin alpha-3-chain 468 32950 cytoplasm and cytoskeleton muscle protein 294
150. P07951 TPM2 Tropomyosin beta chain 466 32851 cytoplasm and cytoskeleton muscle protein 067
151. P49815 TSC2 Tuberin* 698 200608 cytoplasm tumor suppressor and intracellular protein traffic 401
152. P07437 TUBB Tubulin beta chain* 478 49671 cytoplasm and cytoskeleton protein binding and structural constituent of cytoskeleton 435
153. P78324 SIRPA Tyrosine-protein phosphatase non-receptor type substrate 1* 651 54967 membrane involved in intracellular signaling during synaptogenesis and in synaptic function 276
154. Q9NPG3 UBN1 Ubinuclein-1* 937 121520 nucleus, cell junction novel regulator of senescence 262
155. Q14139 UBE4A Ubiquitin conjugation factor E4 A* 511 123522 cytoplasm protein metabolism and modification 261
156. Q9Y6A4 CFAP20 Cilia- and flagella-associated protein 20* 978 22774 nucleus transcription factor 093
157. Q15849 SLC14A2 Urea transporter 2* 651 101209 cell membrane transport protein 127
158. Q8N6Y0 USHBP1 Usher syndrome type-1C protein-binding protein 1 558 76068 cytoplasm nucleus plasma membrane signal transduction 169
159. P62955 CACNG7 Voltage-dependent calcium channel gamma 7 subunit 665 31003 membrane calcium transport 346
160. P21281 ATP6V1B2 V-type proton ATPase subunit B brain isoform 557 56501 peripheral membrane protein cation transport 148
161. Q9UJW8 ZNF180 Zinc finger protein 180 (HHZ168)* 804 79111 nucleus involved in transcriptional regulation 193
162. Q7Z3V5 ZNF571 Zinc finger protein 571* 871 70792 nucleus involved in transcriptional regulation 354
163. Q9H582 ZNF644 Zinc finger protein 644 843 149565 nucleus involved in transcriptional regulation 369
164. Q15776 ZKSCANS Zinc finger protein with KRAB and SCAN domains 8 704 65816 nucleus transcription factor 312
a

The identification and quantitation of proteins were performed using the Protein Pilot Paragon Method The MS/MS data were processed using a mass tolerance of 10 ppm and 02 Da for the precursor and fragment ions respectively

b

According to “UniProtKB” (http://wwwuniprotorg/)

c

According to “Compute pI/MW” (http://webexpasyorg/compute_pi/)

*

Proteins involved in epithelial neoplasia (p-value=362E-05).