Skip to main content
. 2016 Sep 29;90(20):9058–9074. doi: 10.1128/JVI.00856-16

TABLE 2.

Gene ontology enrichment analysis using mean log P value for biological process terms

Total no. of genes in set No. of tested genes in seta Gene set statisticb Gene set P valuec Gene set description
156 100 1.903920114 1.46E−28 Xenobiotic metabolic process
137 99 1.620075009 2.68E−12 Response to nutrient
41 24 2.680057789 1.21E−11 Secondary metabolic process
14 10 3.896239669 1.23E−10 Glycoside metabolic process
91 55 1.879901718 1.95E−10 Terpenoid metabolic process
8 6 5.132219556 3.30E−10 Aminoglycoside antibiotic metabolic process
8 6 5.132219556 3.30E−10 Daunorubicin metabolic process
8 6 5.132219556 3.30E−10 Doxorubicin metabolic process
80 48 1.962377737 4.01E−10 Diterpenoid metabolic process
110 69 1.72724906 4.74E−10 Isoprenoid metabolic process
60 42 2.044646234 6.84E−10 Tetrapyrrole metabolic process
9 7 4.598087516 7.69E−10 Polyketide metabolic process
12 7 4.582972329 8.76E−10 Flavonoid metabolic process
39 28 2.353678461 1.09E−09 Porphyrin-containing compound metabolic process
101 68 1.701032533 2.89E−09 Unsaturated fatty acid metabolic process
88 60 1.758042245 4.39E−09 Icosanoid metabolic process
88 60 1.758042245 4.39E−09 Fatty acid derivative metabolic process
76 46 1.912375696 8.92E−09 Retinoid metabolic process
94 67 1.668312943 2.07E−08 Cellular hormone metabolic process
10 9 3.494980169 1.01E−07 Xenobiotic catabolic process
35 22 2.346522543 1.86E−07 Drug metabolic process
21 14 2.747511772 3.61E−07 Retinoic acid metabolic process
23 17 2.498626389 7.22E−07 Quinone metabolic process
9 6 3.99034837 9.37E−07 Omega-hydroxylase P450 pathway
6 5 4.310759589 1.04E−06 Porphyrin-containing compound catabolic process
6 5 4.310759589 1.04E−06 Tetrapyrrole catabolic process
6 5 4.310759589 1.04E−06 Heme catabolic process
6 5 4.310759589 1.04E−06 Pigment catabolic process
67 46 1.756731978 1.40E−06 Regulation of smooth muscle cell proliferation
a

Tested genes are those in the gene set for which a gene statistic has been submitted.

b

Mean −log10 value of the tested genes in the gene set.

c

P value corresponding to the gene set statistic.