Table 1.
RNA-seq data statistics
| Samplesa | Raw reads | Clean readsb | Q20(%)c | Q30(%)d | Mapped reads |
|---|---|---|---|---|---|
| Stem 1 | 59,102,236 | 57,577,862 | 93.85 | 88.22 | 47,226,724e (82.02 %)f |
| Stem 2 | 67,819,362 | 66,055,988 | 94.11 | 88.62 | 53,359,164 (80.78 %) |
| Flower | 67,947,254 | 66,335,064 | 93.72 | 88.03 | 53,283,472 (80.32 %) |
| Fruit 1 | 75,874,632 | 74,068,030 | 93.49 | 87.66 | 60,369,578 (81.51 %) |
| Fruit 2 | 68,449,270 | 66,996,440 | 93.57 | 87.79 | 54,771,500 (81.75 %) |
| Seed 1 | 69,280,068 | 67,642,194 | 93.84 | 88.16 | 53,799,756 (79.54 %) |
| Seed 2 | 59,641,868 | 58,099,130 | 93.58 | 87.7 | 46,526,234 (80.08 %) |
| Total reads | 468,114,690 | 456,774,708 |
a1 and 2 represent two independent biological replicates
bThe number of reads generated from sequencing after filtering low quality reads (Q ≤ 5)
cQ20: The percentage of bases with a Phred value >20
dQ30: The percentage of bases with a Phred value >30
eThe number of reads from clean data that were mapped back onto the assembled transcriptome
fThe percentages of reads account for the mapped reads