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. 2016 Oct 1;2016:baw125. doi: 10.1093/database/baw125

Table 2.

Vocabularies used within the GGBN Data Standard. basisOfRecord and materialSampleType serve as top level classification for each record

Vocabulary Description
basisOfRecord/RecordBasis Darwin Core/ABCD term: The specific nature of the data record. Controlled vocabulary: PreservedSpecimen, FossilSpecimen, LivingSpecimen, HumanObservation, MachineObservation, MaterialSample
materialSampleType Classification of kind of physical sample in addition to BasisOfRecord/RecordBasis and Preparation Type. Recommended vocabulary: tissue, culture strain, specimen, DNA, RNA, Protein, environmental sample
Material Sample basic lab facts about a physical DNA or tissue sample; contains terms from MIxS and terms matching some of those in BRISQ Tier 1
Loan aspects of loan information on specimens, tissue or DNA samples
Permit legal aspects of sample acquisition, loans and use
Preparation aspects of specimen or tissue sample preparation or DNA extraction (handled as a preparation); contains terms from SPREC and terms matching some of those in BRISQ Tier 1
Preservation aspects of sample preservation in a physical collection; contains terms matching some of those in BRISQ Tier 1
Amplification aspects of amplification, sequencing and genetic accession numbers; contains terms from MIxS
DNA Cloning aspects of DNA cloning and NGS libraries; contains terms from MIxS
Gel Image gel image facts
Single Read aspects of a single read, including chromatograms and primers