TABLE 1.
The total count represents the number of clonotypes that encode the doublet motif. The 30 most frequent motifs are shown. The number of motifs whose codon usage is compatible with D-region encoding is also shown. A minimum of five continuous bases were required. Percentages are relative to the entire dataset.
| Total | Dencoded | |||
|---|---|---|---|---|
| motif | count | percent | count | percent |
| GG | 1981 | 4.20% | 1126 | 2.39% |
| SG | 1529 | 3.25% | 1062 | 2.25% |
| AG | 1400 | 2.97% | 1069 | 2.27% |
| TG | 1332 | 2.83% | 890 | 1.89% |
| GT | 1229 | 2.61% | 1023 | 2.17% |
| GL | 992 | 2.11% | 508 | 1.08% |
| RG | 972 | 2.06% | 851 | 1.81% |
| PG | 939 | 1.99% | 0 | 0.00% |
| GS | 919 | 1.95% | 0 | 0.00% |
| QG | 914 | 1.94% | 844 | 1.79% |
| GA | 910 | 1.93% | 555 | 1.18% |
| LA | 904 | 1.92% | 766 | 1.63% |
| GR | 764 | 1.62% | 292 | 0.62% |
| TS | 739 | 1.57% | 451 | 0.96% |
| GQ | 708 | 1.50% | 553 | 1.17% |
| GP | 640 | 1.36% | 0 | 0.00% |
| IG | 585 | 1.24% | 0 | 0.00% |
| LG | 562 | 1.19% | 0 | 0.00% |
| GV | 552 | 1.17% | 0 | 0.00% |
| SS | 441 | 0.94% | 50 | 0.11% |
| GD | 440 | 0.93% | 0 | 0.00% |
| DR | 437 | 0.93% | 326 | 0.69% |
| SP | 434 | 0.92% | 0 | 0.00% |
| VG | 426 | 0.90% | 0 | 0.00% |
| RD | 405 | 0.86% | 0 | 0.00% |
| SL | 380 | 0.81% | 0 | 0.00% |
| RA | 367 | 0.78% | 0 | 0.00% |
| SR | 343 | 0.73% | 0 | 0.00% |
| AS | 340 | 0.72% | 110 | 0.23% |
| MG | 330 | 0.70% | 0 | 0.00% |
| TOTAL | 47117 | 11859 | 25.17% |