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. Author manuscript; available in PMC: 2017 Sep 27.
Published in final edited form as: Biochemistry. 2016 Sep 15;55(38):5423–5433. doi: 10.1021/acs.biochem.6b00735

Table 1.

Data Collection and Refinement Statistics for Irp3 Holo Structures

NADP+-bound NADP+- and HPTT-bound
Data Collectiona
wavelength (Å) 0.9795 1.1887
space group P21 P21
cell dimensions [a, b, c (Å); β (deg)] 41.44, 148.51, 65.01; 95.62 41.39, 148.55, 65.40; 95.30
resolution (Å) 39.74–1.45 (1.53–1.45) 39.42–1.28 (1.34–1.28)
R sym b 0.088 (0.850) 0.056 (0.488)
R meas 0.095 (0.922) 0.066 (0.588)
R pim 0.036 (0.352) 0.035 (0.322)
total no. of observations 934414 (131446) 696955 (78679)
total no. of unique observations 136095 (19678) 196862 (25144)
mean I/sd(I) 12.0 (2.1) 12.5 (2.5)
completeness (%) 98.4 (97.5) 96.7 (84.6)
redundancy 6.9 (6.7) 3.5 (3.1)
Wilson B factor (Å2) 15.28 14.26
Refinement
resolution (Å) 39.74–1.45 (1.47–1.45) 36.04–1.28 (1.29–1.28)
R cryst c 0.159 (0.260) 0.162 (0.286)
R free 0.179 (0.280) 0.174 (0.296)
total no. of unique observations 136023 (3993) 196796 (3750)
no. of non-hydrogen atoms
    protein 5630 5715
    NADP+ 96 144
    HPTT-COOH 40
    solvent 8 24
    water 457 474
root-mean-square deviation for bonds (Å) 0.008 0.011
root-mean-square deviation for angles (deg) 1.147 1.16
overall mean B factor (Å2) 20.54 20.6
    protein 19.98 19.98
    NADP+ 18.35 21.13
    HPTT-COOH 23.42
Ramachandran plot analysisd (%)
    favored region 97.08 97.01
    allowed region 2.92 2.99
    outlier region 0.00 0.00
a

Data indexed and scaled with XDS.

b

Rsym=hIhIhIh, where Ih is the intensity of reflection h and 〈I〉 is the mean intensity of all symmetry-related reflections.

c

Rcryst=FoFcFo, where Fo and Fc are observed and calculated structure factor amplitudes, respectively. Five percent of the reflections was reserved for Rfree.

d

Calculated with MolProbity.