Table IV. List of “core” switchgrass genes enriched in ≥ 3/4 experiments and with known homologs involved in drought response.
The number of genes found in the core list is presented. For specific genes, references and additional information, see Supplemental Table S2.
Functional Category | Predicted Gene Function | No. of Genes |
---|---|---|
Water stress response |
Dehydrins | 4 |
LEA proteins | 3 | |
Aquaporin |
1 |
|
Cell rescue, abiotic stress response, and senescence |
DnaJ-like molecular chaperones | 4 |
Other chaperones | 6 | |
Senescence | 2 | |
Response to biotic and abiotic stress | 3 | |
chitinase | 1 | |
multidrug resistance |
1 |
|
ROS detoxification |
Glutathione S-transferase | 2 |
l-ascorbate peroxidase | 1 | |
ascorbate oxidoreductase |
1 |
|
ABA response pathway |
Protein phosphatase 2C | 13 |
AREB factor | 1 | |
NCED9 | 2 | |
ABA/WDS induced protein |
5 |
|
Transcription factors |
Homeobox family | 4 |
AP2 domain | 4 | |
Heat shock responsive TF | 1 | |
MYB family | 4 | |
Zink finger family | 10 | |
CCAAT-binding factor | 1 | |
MADS box |
2 |
|
Cell signaling |
Protein kinases | 23 |
Osmotic stress potassium transporter | 1 | |
GTP-binding | 2 | |
Ca2+-binding transmembrane protein |
1 |
|
C4 Photosynthesis |
Auxin response | 2 |
Light harvesting | 7 | |
Ala aminotransferase | 2 | |
Phosphoenolpyruvate carboxykinase | 1 | |
Malate dehydrogenase |
3 |
|
Metabolism | Pro biosynthesis | 1 |
Suc synthase | 2 | |
β-amylase | 3 |