Table II. Final set of QTLs for grain yield (t ha⁻¹) with position, effects, scenarios with minimum and maximum effects and number of genes in the region around QTL position.

SNP Namea	SNP position (pb)b	Chrc	Binc	Region (Mbp)d	Region (cM)d	-log10(P)	Allelic effect range (t ha−1)		Scenarios with min. effectsf	Scenarios with max. effectsg	Nb of genesh
							Mine	Maxe
QTLs of Tolerance to High Temperature or Evaporative Demand
AX-90681970	119501405	1	1.05	118.51–120.62	113.97–114.17	5.3	−0.12	0.22	All Cool	All Hot	16
AX-90728209	295726849	1	1.11	295.51–295.79	256.97–257.48	5.9	−0.13	0.25	WD Cool	WD Hot	10
AX-91388323	17398949	3	3.04	17.29–17.52	49.9–50.1	5.1	−0.10	0.31	WW Cool	WW Hot	3
AX-91419621	5773880	5	5.01	5.74–5.81	20.61–20.81	5.5	−0.09	0.29	WD Cool	All Hot	7
AX-90548584	18990406	6	6.01	11.12–24.47	9.34–9.56	13.4	−0.16	0.36	WD Cool	WW Hot	153
AX-91685911	25582930	6	6.01	24.88–25.9	9.64–9.92	5.4	−0.11	0.44	WW Cool	All Hot	6
AX-90648418	132186162	10	10.05	132.09–132.35	84.93–85.21	6.2	−0.05	0.38	WW Cool	WW Hot	11
AX-91194279	141619465	10	10.06	141.6–141.65	109.54–109.74	5.2	−0.10	0.47	WD Cool	WW Hot	2
QTLs of Tolerance to Water Deficit or to Combined Water Deficit and High Temperature
AX-90663757	50439360	1	1.03	50.21–51.01	71.48–71.82	6.1	−0.07	0.44	WW Cool	WD Cool	9
AX-90711265	234219088	1	1.08	234.14–234.31	193.55–193.75	5.0	−0.15	0.32	WW Cool	WD Cool	7
AX-91499584	249530930	1	1.08	249.35–249.72	205.47–205.67	5.1	−0.17	0.24	WW Hot(day)	WD Cool	14
AX-90636164	280572987	1	1.10	280.5–280.66	230.44–230.66	5.4	−0.16	0.34	WW Hot(day)	WD Cool	10
AX-90734735*	16773313	2	2.03	16.73–16.82	54.4–54.6	5.1	−0.19	0.19	WW Hot(day)	WD Cool	1
AX-91517386*	44474968	2	2.04	44.29–44.67	81.95–82.16	5.7	−0.20	0.24	WW Cool	WD Cool	13
AX-90832809	150434035	3	3.05	150.2–150.8	65.67–65.93	5.4	−0.16	0.25	All WW	All WD	4
AX-90629633*	16418312	4	4.03	16.36–16.5	38.31–38.51	5.0	−0.34	0.34	WW Hot(day)	WD Hot	3
AX-90648211	200188443	4	4.08	199.03–201.47	114.21–114.41	5.2	−0.05	0.55	WW Cool	WD Hot	50
AX-90979819*	6613959	6	6.00	6.52–7.28	6.88–7.6	9.3	−0.23	0.26	WW Cool	WD Hot	21
AX-90998525	84384458	6	6.01	84.28–84.49	16.99–17.19	5.9	−0.02	0.43	WW Cool	All WD	3
AX-91101271	125931027	8	8.05	125.87–125.99	110.13–110.39	5.4	−0.18	0.36	WW Cool	WD Hot	2
QTLs of Plant Performances that Disappeared under Stressing Conditions
QTLs Associated with a Comparative Advantage in WW
AX-90650418	2797566	1	1.01	2.76–2.85	6.07–6.27	5.2	−0.11	0.29	WD Hot(day)	WW Hot(day)	5
AX-90590040**	158974646	3	3.05	158.62–159.08	71.86–72.34	6.2	−0.02	0.34	All WD	All WW	5
AX-91642932	5435055	5	5.01	5.41–5.48	19.53–19.73	5.4	−0.10	0.25	All WD	All WW	3
AX-91366227	5155708	6	6.00	5.08–5.25	5.24–5.44	6.0	−0.22	0.29	WD Cool	WW Cool	3
AX-91685880	25317825	6	6.01	24.92–26.04	9.65–9.97	6.5	−0.15	0.38	WD Hot(day)	WW Hot(day)	6
AX-91072197	12782249	8	8.02	12.74–12.83	33.58–33.78	5.9	−0.25	1.34	All WD	All WW	3
AX-91105090	139338906	8	8.05	139.05–139.64	124.98–125.18	5.1	−0.05	0.39	All WD	All WW	9
QTLs Associated with a Comparative Advantage in Cool and Hot(day)
AX-91203024	2430515	1	1.01	2.39–2.48	5.25–5.45	6.4	0.02	0.29	All Hot	All others	3
AX-90658944	33122606	1	1.03	32.96–33.29	63.8–64	5.6	−0.11	0.40	WW Hot(day)	WW Cool	6
AX-91510619	7524873	2	2.02	7.5–7.55	26.28–26.48	5.3	−0.06	0.31	WD Hot	WD Cool	2
AX-91520713	62023101	2	2.04	61.77–62.29	89.88–90.08	5.7	−0.24	0.34	WD Hot	WD Cool	6
AX-90973370	201266231	5	5.06	201.23–201.32	139.7–139.9	6.1	−0.16	0.31	All Hot	All Cool + Hot(day)	2
AX-91726785	75172928	7	7.02	55.33–81.98	38.92–39.12	5.4	−0.15	0.38	All Hot	All Cool + Hot(day)	166
AX-91201897	71654502	8	8.03	71.06–72.32	67.02–67.22	5.4	−0.10	0.60	WD Hot	All Hot(day)	16
QTLs Associated with a Comparative Advantage in WW and Cool Conditions Only
AX-91440967	212986628	1	1.07	212.87–213.18	163.66–164.02	5.6	−0.15	0.35	WD Hot	WW Cool	10
AX-90792361	232389200	2	2.09	232.35–232.46	201.29–201.53	5.5	−0.23	0.63	WD Hot	WW Cool + Hot(day)	8
AX-90796025	8267933	3	3.02	8.25–8.3	31.08–31.28	5.7	−0.08	0.27	WD Cool	WW Hot(day)	4
AX-91445849	13278110	3	3.04	13.23–13.34	44.38–44.58	5.8	−0.16	0.25	WD Hot	WW Cool	4
AX-90539808	187430601	3	3.06	187.3–187.53	117.84–118.08	5.3	0.02	0.33	WD Hot	All Hot(day)	10
AX-90597453	159743301	3	3.05	159.43–159.84	72.71–73.15	7.5	−0.12	0.56	WD Hot	WW Hot(day)	12
PZE-103171561	218787839	3	3.09	218.74–218.85	161.22–161.42	5.4	−0.05	0.49	All WD	WW Hot(day)	9
AX-91643166	6672502	5	5.01	6.64–6.71	23.42–23.62	5.2	−0.14	0.32	WD Hot	WW Hot(day)	4
AX-91654943	70841813	5	5.03	70.61–71.08	72.45–72.65	5.8	−0.14	0.27	WD Hot	WW Hot(day)	23
AX-91715582	15743645	7	7.02	15.55–15.95	34.22–34.42	5.3	−0.18	0.53	WD Hot(day)	WW Cool	3
AX-91026565	16948400	7	7.02	16.71–17.21	34.76–34.96	5.4	−0.18	0.53	WD Hot(day)	WW Cool	4
QTLs with No Clear Pattern of Allelic Effects
AX-91405380**	159499687	8	8.06	159.43–159.58	136.69–136.89	6.4	0.03	0.39	High positive effect in all scenarios		4
AX-91047031	97064114	7	7.02	96.12–97.71	40.54–40.77	5.2	−0.14	0.41	No contrast for scenarios and no relationship with any variable		11
AX-90571454	173077597	8	8.08	173.04–173.12	173.26–173.5	5.0	−0.24	0.31			8

^*, QTLs that displayed inversion of effects; **, QTLs that colocated with QTLs of anthesis.

^aSNP with the highest –log₁₀(P-value).

^bSNP physical position.

^cChromosome and bin (a subdivision of the maize chromosomes).

^dQTL region (in physical and genetic units).

^eMinimum and maximum effects in individual experiments.

^fEnvironmental scenarios in which allelic effects were minimum.

^gEnvironmental scenarios in which allelic effects were maximum.

^hNumber of genes in the region of the QTL.