Table 2. Core bacterial taxa shared by three P. placomus samples and their relative abundance in each sample, as a percentage of the total taxa.
| Core taxa | # OTUs | NF12.19Q1 | NF12.19Q2 | NF12.19Q5 | ||||
|---|---|---|---|---|---|---|---|---|
| Phylum | Class | Order | Family | Genus | ||||
| Actinobacteria | Actinobacteria | Actinomycetales | Microbacteriaceae | Curtobacterium | 1 | 0.0 | 0.1 | 0.1 |
| Actinobacteria | Actinobacteria | Actinomycetales | Propionibacteriaceae | Propionibacterium | 1 | 0.3 | 0.6 | 0.9 |
| Bacteroidetes | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | 1 | 1.0 | 0.0 | 0.2 | |
| Firmicutes | Bacilli | Bacillales | 1 | 1.8 | 3.3 | 0.1 | ||
| Firmicutes | Bacilli | Bacillales | Alicyclobacillaceae | Alicyclobacillus | 1 | 0.4 | 0.1 | 0.0 |
| Firmicutes | Bacilli | Bacillales | Bacillaceae | Bacillus | 1 | 4.8 | 15.6 | 0.7 |
| Planctomycetes | Phycisphaerae | Phycisphaerales | 9 | 5.0 | 1.7 | 6.2 | ||
| Planctomycetes | Planctomycetia | Pirellulales | Pirellulaceae | 6 | 5.3 | 4.0 | 5.7 | |
| Proteobacteria | Alphaproteobacteria | Rhizobiales | Bradyrhizobiaceae | Bradyrhizobium | 1 | 0.9 | 0.4 | 0.0 |
| Proteobacteria | Alphaproteobacteria | Rhizobiales | Phyllobacteriaceae | 1 | 0.6 | 0.1 | 0.0 | |
| Proteobacteria | Alphaproteobacteria | Rhodobacterales | Rhodobacteraceae | 2 | 0.3 | 0.4 | 2.0 | |
| Proteobacteria | Alphaproteobacteria | Rhodospirillales | Rhodospirillaceae | Magnetospirillum | 1 | 0.2 | 0.3 | 0.1 |
| Proteobacteria | Betaproteobacteria | Burkholderiales | Alcaligenaceae | 1 | 0.0 | 0.2 | 0.1 | |
| Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | 2 | 0.3 | 1.3 | 0.7 | |
| Proteobacteria | Deltaproteobacteria | NB1-j | JTB38 | 1 | 0.7 | 0.2 | 0.9 | |
| Proteobacteria | Epsilonproteobacteria | Campylobacterales | 1 | 0.3 | 0.6 | 0.8 | ||
| Proteobacteria | Gammaproteobacteria | Alteromonadales | 2 | 0.2 | 1.7 | 0.5 | ||
| Proteobacteria | Gammaproteobacteria | Alteromonadales | OM60 | 1 | 0.3 | 0.0 | 0.2 | |
| Proteobacteria | Gammaproteobacteria | Enterobacteriales | Enterobacteriaceae | 1 | 0.3 | 0.5 | 0.2 | |
| Proteobacteria | Gammaproteobacteria | Legionellales | 2 | 0.1 | 38.1 | 43.5 | ||
| Proteobacteria | Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Acinetobacter | 1 | 0.4 | 0.5 | 0.2 |
| Proteobacteria | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | 2 | 1.3 | 0.0 | 0.7 |
| Proteobacteria | Gammaproteobacteria | Thiotrichales | Francisellaceae* | Caedibacter | 3 | 1.6 | 1.2 | 6.4 |
| Proteobacteria | Gammaproteobacteria | Vibrionales | Vibrionaceae | 1 | 34.3 | 0.7 | 1.3 | |
| Proteobacteria | Gammaproteobacteria | Vibrionales | Vibrionaceae | Enterovibrio | 1 | 0.1 | 0.9 | 3.3 |
| Proteobacteria | Gammaproteobacteria | Vibrionales | Vibrionaceae | Photobacterium | 1 | 0.4 | 0.0 | 0.2 |
| Proteobacteria | Gammaproteobacteria | Xanthomonadales | Xanthomonadaceae | 1 | 0.3 | 0.1 | 0.2 | |
| Proteobacteria | Gammaproteobacteria | Xanthomonadales | Xanthomonadaceae | Lysobacter | 1 | 6.9 | 17.0 | 0.1 |
| TOTALS | 68.1 | 89.6 | 75.3 | |||||
Notes.
*
Caedibacter are actually incertae sedis, being closely related to both Legionella and Francisella, but placed in Francisellaceae by Greengenes database.
A value of 0.0 means <0.1%.