Table 2. Identified SNPs defining the Lineage 1.0/2.0 divergence (Top) and the Bovine-associated/Poultry-associated divergence (Bottom).
Lineage 1.0 / 2.0 | Locus Tag a | Annotation b | Genome Position a | nt Lineage 2.0 | nt Lineage 1.0 | Substitution c | aa Lineage 2.0 | aa Lineage 1.0 | aa Position a | Method |
intergenic | 528068 | C | T | 1, 2, 3 | ||||||
SeKA_A1002 | LysR substrate binding domain protein | 953413 | A | G | S | Leu | Leu | 223 | 1, 2, 3 | |
SeKA_A1027 | nitrite extrusion protein 2 | 984718 | C | T | S | Pro | Pro | 288 | 1, 2, 3 | |
intergenic | 1032798 | A | G | 2, 3 | ||||||
SeKA_A1948 | amidophosphoribosyltransferase | 1876321 | G | A | S | Ala | Ala | 288 | 1, 2, 3 | |
intergenic | 2432705 | T | G | 1, 2, 3 | ||||||
intergenic | 3169966 | T | G | 1, 2, 3 | ||||||
SeKA_A4700 | propionate—CoA ligase | 4587482 | A | C | NS | Asn | Thr | 240 | 2, 3 | |
Bovine / Poultry | Locus Tag a | Annotation b | Genome Position a | nt Poultry-associated | nt Bovine-associated | Substitution c | aa Poultry | aa Bovine | aa Position | Method |
SeKA_A1094 | protein YdcF | 1055798 | T | C | NS | Thr | Ala | 43 | 1, 2, 3 | |
SeKA_A2591 | hemolysin-3 | 2519134 | A | C | NS | Phe | Val | 32 | 3 | |
SeKA_A2812 | methyltransferase family protein | 2713142 | G | A | NS | Ser | Leu | 39 | 1, 2, 3 | |
SeKA_A4467 | carbonate dehydratase | 4347265 | G | T | NS | Ala | Asp | 22 | 1, 2, 3 |
a = Locus/Position in S. Kentucky CVM29188
b = Annotation in S. Kentucky CVM29188 (accession no. ABAK02000001.1)
c = S(synonymous), NS(nonsynonymous)
1 = Parsnp
2 = Lyve-SET
3 = CFSAN SNP Pipeline