Table 6. Number of SNP differences between ST198/ST152 and subclade A1 serovars.
For this analysis representatives of subclade A1 were selected. Parsnp was used to identify core-genome SNPs among the sequenced isolates. The chromosome of S. Kentucky CVM29188 was used as a reference genome for the SNP analysis.
| Serovar/Strain | No. SNP differences with S. Kentucky CVM29188 | Serovar/Strain | No. SNP differences with S. Kentucky ATCC 9263 | |
|---|---|---|---|---|
| S. Cubana CFSAN001083 | 27369 | S. Senftenberg ATCC 43845 | 27140 | |
| S. Tennessee TXSC-TXSC08-21 | 27457 | S. Agona 632182–2 | 27743 | |
| S. Meleagridis 0047 | 27821 | S. Worthington ATCC 9607 | 27746 | |
| S. Soerenga 695 | 27927 | S. Havana CFSAN001082 | 28073 | |
| S. Rissen 150 | 27958 | S. Paratyphi B ATCC BAA-1585 | 28638 | |
| S. Seftenberg 604314 | 28066 | S. Albany ATCC 51960 | 28658 | |
| S. Paratyphi B ATCC BAA-1585 | 28156 | S. Seftenberg 604314 | 29329 | |
| S. Agona ATCC 51957 | 28445 | S. Rissen 150 | 29582 | |
| S. Albany ATCC 51960 | 28815 | S. Meleagridis 0047 | 29614 | |
| S. Derby 626 | 29621 | S. Cubana CFSAN001083 | 29685 | |
| S. Havana CFSAN001082 | 29635 | S. Tennessee TXSC-TXSC08-21 | 29768 | |
| S. Senftenberg ATCC 43845 | 29718 | S. Kentucky CVM29188 (ST152) | 29971 | |
| S. Agona 632182–2 | 29940 | S. Agona ATCC 51957 | 29974 | |
| S. Kentucky ATCC 9263 (ST198) | 29971 | S. Soerenga 695 | 30015 | |
| S. Weltevreden HI-N05-537 | 30078 | S. Derby 626 | 30451 | |
| S. Worthington ATCC 9607 | 30140 | S. Weltevreden HI-N05-537 | 31088 | |
| S. Sloterdijk ATCC 15791 | 30485 | S. Sloterdijk ATCC 15791 | 31309 |