Table 2. PCR primer specifications.
Primer | Sequence 5′-3′ [bp] | Combinations | T (°C) | Product length (bp) |
---|---|---|---|---|
PRDM9-F1 | GGGGTAGGAATCTCAAGAATTG[22] | F3-R1 | 54 | 594 (5′ end) |
PRDM9-F2 | AAGAATTGCAAGGGTCAAGTATG[23] | F1/F2-R3 | 53 | 977–1481/963–1467 |
PRDM9-F3 | TGGTGGGAGACAGCTTGC[18] | F3-R3 | 53 | 1501–2005 |
PRDM9-F4 | GCCAAGAGGACGAGTAAGTCAATAG[25] | F5-R4 | 56 | 1152–1656 |
PRDM9-F5 | CAAAGATCCACCCATGTTC[19] | F4-R2 | 57 | 198 (3′ end) |
PRDM9-R1 | TGACTCATCACTGAGGCCTTG[21] | |||
PRDM9-R2 | CCTCATCTCTAGTCATGAAAGTGG[24] | |||
PRDM9-R3 | GAAGCACCCTCCAAGCTG[18] | |||
PRDM9-R4 | GGTCTCTTTACACTCTTGSAGTC[23] |
Given are applied primer combinations, annealing temperatures and product lengths.