Fig. 5.

Integrated grapevine HY5 and HYH community gene co-expression and cis-regulatory subnetwork. Square and circle nodes indicate co-expressed target genes and the presence of various HY5 consensus CREs predicted in co-expressed target genes. Square nodes indicate putative functions of co-expressed target genes; DNA repair, flavonoid, HSP and chaperones, jasmonic acid, photosynthesis, terpenes, transporters, and UV markers. Circle nodes, shown as pie charts, indicate the type of HY5 consensus CRE present in the promoter region of each co-expressed gene. Edges represent significant co-expression between each unique and shared HY5 and HYH subnetwork. Edges also indicate the nodes supported by one, two, three, four, five, and six co-expression networks. Gene IDs can be found in Supplementary Table S8. (This figure is available in colour at JXB online.)