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. 2015 Sep 1;58(1):12–28. doi: 10.1111/jipb.12372

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© 2015 The Authors. Journal of Integrative Plant Biology published by Wiley Publishing Asia Pty Ltd on behalf of Institute of Botany, Chinese Academy of Sciences.

This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

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Predicted amino acid sequence of OsCDC48 and dendrogram of CDC48 proteins (A, B) The N‐terminus is underlined (1‐191 aa); two ATPase domains are in bold: D1 (213‐466 aa) and D2 (486‐770 aa); the C‐terminus is in bold and underlined (771‐809 aa); link 1 (DGEPIKREDEERLDEVGYDDVG) is located between the N‐terminus and D1; link 2 (PSALRETVVEVPNVSWEDIG) is located between D1 and D2; two nucleus signal peptides (KK (8×) RKK and KGKKRKD) are in italics in the N‐terminus; the Walker A are in magenta characters; the Walker B are in yellow characters. (C) A total of 18 CDC48 homologs from 17 different species were used for analysis including: OsCDC48 (LOC_Os03g05730), OsCDC48E (Os10g0442600), Arabidopsis thaliana (A. thaliana) (Q9LZF6), Nicotiana tabacum (N. tabacum) (XP_009628175), Glycine max (G. max) (P54774), Sorghum bicolor (S. bicolor) (XP_002465842), Zea mays (Z. mays) (XP_008671992), Triticum urartu (T. urartu) (EMS63012), Capsicum annuum (C. annuum) (Q96372), Archaeoglobus fulgidus (A. fulgidus) (O28972), Caenorhabditis elegans (C. elegans) (P54811), Saccharomyces cerevisiae (S. cerevisiae) (P25694), Danio rerio (D. rerio) (P23787), Drosophila melanogaster (D. melanogaster) (Q7KN62), Mus musculus (M. musculus) (Q01853), Rattus norvegicus (R. norvegicus) (P46462), and Homo sapiens (H. sapiens) (P55072). Distance scale = 0.05.