Table 1. Comparative analysis of carbonic anhydrase putative active site pocket amino acid residues and amino acids whose side chains either project into or border the active site in lamprey (Pma) Ca18 (GenBank;.AAZ83742.1) and Ca19 (GenBank, ALM25804.1), with rainbow trout (Omy) Cac (Ca17a) (GenBank, NP_001166020.1), and human (Hsa) CA1 (GenBank, NP_001729.1) and 2 (GenBank, NP_000058.1) modelled after Tashian et al. 4 and Gilmour et al. 15.
7 | 29 | 61 | 62 | 64 | 65 | 66 | 67 | 69 | 91 | 92 | 94 | 96 | 106 | 107 | 117 | 119 | 121 | 131 | 141 | 143 | 145 | 192 | 194 | 198 | 199 | 200 | 201 | 202 | 204 | 206 | 207 | 209 | 211 | 244 | 246 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
* | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | ||||||||||||||||||||
+ | Z | Z | Z | ~ | ~ | ~ | ~ | ~ | ~ | |||||||||||||||||||||||||||
Hsa CA2 | Y | S | N | N | H | S | F | N | E | I | Q | H | H | E | H | E | H | V | F | L | V | G | W | Y | L | T | T | P | P | L | C | V | W | V | N | R |
Pma Ca19 | . | . | . | S | . | . | . | S | D | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | N | S | A | . | . | T | P |
Pma Ca18 | . | . | . | . | . | . | . | S | . | K | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | F | S | . | . | . | . | . |
Omy Ca17a | . | . | . | . | . | . | . | Q | T | K | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S | . | . | . | . | . |
Hsa CA1 | . | . | . | V | . | . | . | H | N | F | . | . | . | . | . | . | . | A | L | . | . | . | . | . | . | . | H | . | . | Y | S | . | . | I | . | . |
The aa were aligned using ClustalW (BioEdit 7.0.9.0). Numbers represent the location of each amino acid relative to alignment with human CA2. *Active site aa residues; Z, zinc binding ligand; + , proton shuttling associated ligand; ~, substrate associated pocket.