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. Author manuscript; available in PMC: 2017 Aug 5.
Published in final edited form as: J Comput Chem. 2016 Jun 18;37(21):2029–2037. doi: 10.1002/jcc.24417

Table 1.

GIST command options that define the region of interest

Option Description Default Value
gridcntr Grid centroid position[a]
<x> <y> <z>
0.0 0.0 0.0
griddim Grid side length[b]
<x> <y> <z>
40 40 40
gridspacn Voxel side length[a] 0.5
refdens Reference density[c] 0.0334
[a]

Quantities in units of angstroms (Å)

[b]

Quantity in units of voxel count

[c]

Density in molecules per Å3; a list of reference densities for common solvent models can be found in the supplementary information.