Fig. 2.

Pairwise sequence identity scores. Sequences of the ORF1 (lower left) and ORF2 (upper right) translation products of the indicated viruses (original and proposed) were compared in pairs using EMBOSS: needle or needleall. Sequence identity scores are shown in %. Shading off the diagonal highlights more closely related pairs for which the ORF1p score is >40% and the ORF2p score is >65%. For these analyses, the ORF1p sequences of AoAV1 and PpAV1 began with the first residue instead of the first Met residue since their encoding sequences appear to be 5′-truncated, and the ORF2p sequences of AoAV1 and SeAV1 ended with the last residue instead of the last residue before the downstream stop codon since their encoding sequences appear to be 3′-truncated; as a result, their scores here may be artificially low in some instances.