Table 3. Performance (%) comparison on the partial- and full-length testing dataset.

		Partial-length testing dataset				Full-length testing dataset
		CPAT	CNCI	PLEK	lncScore	CPAT	CNCI	PLEK	lncScore
Human	Accuracy	84.03	80.51	63.14	89.12	94.41	92.20	90.61	95.21
	Sensitivity	76.19	65.40	31.76	84.15	94.97	89.00	85.96	95.56
	PPV	92.12	96.46	94.83	94.61	95.46	98.16	98.62	96.64
	Specificity	92.75	97.33	98.07	94.67	92.75	97.33	98.07	94.67
	NPV	77.78	71.65	56.36	84.29	92.00	84.64	81.31	92.99
	MCC	69.41	65.36	39.07	78.85	87.59	84.55	81.96	89.93
Mouse	Accuracy	79.04	76.47	50.07	89.92	94.65	92.83	83.67	96.46
	Sensitivity	72.88	69.24	35.34	88.39	94.19	91.56	81.17	97.35
	PPV	97.97	98.05	90.91	97.61	98.39	98.48	95.75	97.78
	Specificity	95.88	96.23	90.35	94.08	95.88	96.23	90.35	94.08
	NPV	56.40	63.37	33.82	74.78	86.05	80.98	64.18	92.99
	MCC	61.15	58.02	25.21	77.27	84.21	83.52	65.47	91.10

The default cutoff of CPAT, PLEK, and lncScore is shown in Fig. 4, and the default cutoff of CNCI is 0.