Table 4.
Chr | dbSNP | Gene | 1000G MAF | ClinVar Significance | ClinVar Annotation |
---|---|---|---|---|---|
5 | rs61748181 | TERT | 0.014 | Pathogenic | Aplastic_anemia |
17 | rs1042522 | TP53 | 0.602 | Benign | Codon 72 polymorphism/neoplastic syndromes/hereditary |
22 | rs4680 | COMT | 0.389 | Benign | Catechol-o-methyltransferase polymorphism |
22 | rs1065852 | CYP2D6 | 0.255 | Pathogenic | Poor metabolism of Debrisoquine |
7 | rs10246939 | TAS2R38 | 0.549 | Pathogenic | Phenylthiocarbamide tasting |
5 | rs16891982 | SLC45A2 | 0.441 | - | Skin/hair/eye pigmentation variation |
11 | rs1126809 | TYR | 0.112 | Pathogenic | Waardenburg syndrome and ocular albinism |
16 | rs1805007 | MC1R | 0.030 | Pathogenic | Red hair/fair skin/Increased analgesia from kappa-opioid receptor agonist |
12 | rs41276738 | VWF | 0.001 | Pathogenic | Von Willebrand disease |
1 | rs6025 | F5 | 0.994 | - | Thrombophilia due to factor V Leiden |
Please see Additional file 1 for chromosomal position, reference and alternative alleles, and depth of coverage