Table 1. Benchmark data set.
Assembly | EMDB ID | EM resolution (Å) | PDB code | No. of subunit residues | No. of assembly residues | Structure | SCOP class of chains |
---|---|---|---|---|---|---|---|
Saf pilus type A | 1494 | 17 | 3cre | 19, 123, 144 | 286 | Heterocomplex, asymmetric | All-β |
ParM filament | 1980 | 7.2 | 4a6j | 320 | 960 | Homocomplex, asymmetric | α/β |
Biomphalaria glabrata acetylcholine-binding protein type 1 | 2055 | 6 | 4aod | 205 | 1025 | Homocomplex, symmetric | All-β |
Antibody VRC-PG04 in complex with HIV-1 gp120 | 2427 | 23 | 3se9 | 208, 228, 353 | 789 | Heterocomplex, asymmetric | All-β, α+β |
Lidless Mm-cpn in the open state | 5140 | 8 | 3iyf | 521 | 4168 | Homocomplex, symmetric | All-α, α+β, α/β |
Conjugal transfer protein TrwB | 5505 | 20 | 1e9r | 437 | 2622 | Homocomplex, symmetric | α/β |
Circadian clock protein KaiC | 5672 | 16 | 3dvl | 519 | 3114 | Homocomplex, symmetric | α/β |