Table 4.
Prediction Performance of PredSL on Various Completely Sequenced Genomes from Different Taxonomic Groups
| Group | Organism | cTP | lTP | mTP | SP | other | Total |
|---|---|---|---|---|---|---|---|
| Plants | Arabidopsis thaliana | 4,596 (13.8%)* | 184 (5.5%) | 5,326 (16.0%) | 8,191 (24.6%) | 15,160 (45.6%) | 33,273 |
| Thalassiosira pseudonana | 813 (7.1%) | 21 (0.2%) | 1,406 (12.3%) | 2,493 (21.9%) | 6,686 (58.7%) | 11,397 | |
| Fungi | Schizosaccharomyces pombe | – | – | 586 (11.8%) | 511 (10.3%) | 3,890 (78.0%) | 4,987 |
| Saccharomyces cerevisiae | – | – | 566 (13.0%) | 635 (14.5%) | 3,167 (72.5%) | 4,368 | |
| Magnaporthe grisea | – | – | 1,314 (11.8%) | 2,364 (21.3%) | 7,431 (66.9%) | 11,109 | |
| Mammals | Homo sapiens | – | – | 2,727 (9.4%) | 7,221 (24.8%) | 19,159 (65.8%) | 29,107 |
| Mus musculus | – | – | 3,353 (9.4%) | 9,099 (25.5%) | 23,274 (65.2%) | 35,726 | |
| Protozoa | Plasmodium falciparum | – | – | 314 (6.2%) | 706 (14.0%) | 4,029 (79.8%) | 5,049 |
| Dictyostelium discoideum | – | – | 644 (4.7%) | 2,158 (15.8%) | 10,878 (79.5%) | 13,680 | |
| Arhthropoda | Drosophila melanogaster | – | – | 1,949 (10.5%) | 3,973 (21.5%) | 12,576 (68.0%) | 18,498 |
| Bombyx mori | – | – | 1,627 (7.6%) | 2,648 (12.4%) | 17,027 (79.9%) | 21,302 | |
| Fishes | Ciona intestinalis | – | – | 1,383 (8.7%) | 2,370 (15.0%) | 12,099 (76.3%) | 15,852 |
| Takifugu rubripes | – | – | 1,617 (4.3%) | 4,478 (12.0%) | 31,344 (83.7%) | 37,439 |
*
We list the total number of sequences classified in each subcellular location and their percentage in the whole genome.