Table 1.
Predicted genes and their annotations in the 100 kb region of the indica rice line
| Gene ID | Start (bp) | End (bp) | cDNA size (bp) | DNA strand | BLAST hit | Gene function |
|---|---|---|---|---|---|---|
| osi01 | 548 | 2,251 | 762 | + | ABA94924.1 | expressed protein |
| osi02 | 3,637 | 3,897 | 261 | + | ABA94925 | hypothetical protein LOC_Os11g41930 |
| osi03 | 6,691 | 7,218 | 528 | + | ABA94926.1 | hypothetical protein LOC_Os11g41940 |
| osi04 | 8,799 | 9,110 | 312 | + | OSJNBa0041A02.28 | hypothetical protein |
| osi05 | 10,079 | 10,666 | 588 | – | ABA94927.1 | hypothetical protein LOC_Os11g41950 |
| osi06 | 12,127 | 12,441 | 315 | + | ABA94928.1 | hypothetical protein LOC_Os11g41960 |
| osi07 | 13,653 | 15,123 | 525 | – | ABA94924.1 | hypothetical protein |
| osi08 | 15,991 | 30,983 | 4,722 | – | ABA94930.1 | hypothetical protein LOC_Os11g41980 |
| osi09 | 36,253 | 38,219 | 324 | + | ABA94971.1 | Phyb1, putative |
| osi10 | 39,515 | 40,644 | 1,020 | – | BAA75541.1 | L-zip+NBS+LRR |
| osi11 | 45,161 | 49,476 | 699 | + | ABA94971.1 | Phyb1, putative |
| osi12 | 50,252 | 51,649 | 630 | – | ABA94972.1 | L-zip+NBS+LRR, putative |
| osi13 | 54,698 | 55,033 | 336 | – | ABA94973.1 | hypothetical protein LOC_Os11g42020 |
| osi14 | 58,932 | 61,109 | 2,178 | + | ABA94974.1 | expressed protein |
| osi15 | 75,984 | 78,803 | 2,820 | – | ABA94975.1 | NB-ARC domain, putative |
| osi16 | 82,010 | 82,495 | 486 | – | NP_910833.1 | hypothetical protein |