Table 1.
Classification of 395 TE transcripts in L. vannamei transcriptome
| Group | Superfamily/clade | Number | Sum | Family/consensus sequence (number of transcripts) |
|---|---|---|---|---|
| DNA transposon | EnSpm/CACTA | 1 | - | |
| Harbinger | 2 | Harbinger-N1_LVa (2) | ||
| Mariner/Tc1 | 1 | - | ||
| hAT | 1 | - | ||
| Unknown | 4 | 9 | DNA8-1_LVa (2) | |
| LTR retrotransposon | BEL | 33 | BEL-1_LVa-I (6), BEL-2_LVa (1) | |
| Copia | 6 | - | ||
| DIRS | 1 | - | ||
| Gypsy | 56 | 96 | Gypsy-12_LVa-I (3), Gypsy-14_LVa-I (3), Gypsy-16_LVa (3), Gypsy-17_LVa (4), Gypsy-18_LVa (1), Gypsy-1_LVa-I (1), Gypsy-3_LVa-I (1), Gypsy-4_LVa-I (7), Gypsy-5_LVa-I (1) | |
| Non-LTR retrotransposon | CR1 | 50 | Penelope-6_LVa (4) | |
| Crack | 2 | - | ||
| Daphne | 3 | - | ||
| I | 3 | - | ||
| Ingi | 15 | Ingi-1_LVa (5) | ||
| Jockey | 1 | Jockey-1_LVa (1) | ||
| Kiri | 1 | - | ||
| L2B | 1 | - | ||
| Nimb | 53 | Nimb-N2_LVa (1), Nimb-2_LVa (6), Nimb-1_LVa (30) | ||
| Penelope | 52 | Penelope-1_LVa (31), Penelope-2_LVa (5), Penelope-3_LVa (8), Penelope-4_LVa (3), Penelope-5_LVa (2), Penelope-8_LVa (1) | ||
| RTE | 93 | RTE-1_LVa (2), RTE-2_LVa (20), RTE-3_LVa (66), Gypsy-3_LVa-LTR (1) | ||
| RTEX | 1 | - | ||
| Unknown | 9 | 284 | NonLTR-1_LVa (8) | |
| Unknown | Unknown | 6 | 6 | TE-1_LVa (1) |