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. Author manuscript; available in PMC: 2016 Dec 27.
Published in final edited form as: Biometrics. 2016 Apr 8;72(4):1066–1077. doi: 10.1111/biom.12519

Table 5.

Simulation of the scenario described in Equation 6 mimicking the SAM study data. Statistics for 1000 replicates are the bias compared to ME, the empirical standard errors over replicates, the mean asymptotic nuisance-adjusted standard error, and the coverage for the GEE, the IPW, the AUG and the DR with independence (−I) and exchangeable (−E) working correlation matrix.

ME
Standard Error (SE) Coverage
Bias Empirical Robust Fay’s Robust Fay’s
−I −E −I −E −I −E −I −E −I −E −I −E
Small sample M = 10, ni = (10, 20, 30)with probability 1/3 each
 GEE 5.73 2.214 2.213 1.330 1.329 1.829 1.848 1.359 1.363 89.4 88.7 59.4 59.7
 IPW 5.73 0.536 0.537 1.333 1.333 1.214 1.214 1.470 1.471 86.5 86.4 92.1 92.1
 AUG 5.73 0.173 0.173 0.973 0.973 0.878 0.878 0.925 0.925 88.6 88.6 89.9 89.9
   DR 5.73 −0.104 −0.104 1.102 1.101 0.932 0.931 0.982 0.982 90.3 90.3 92.0 92.0

SAM-like sample M = 50, ni = (20, 30, 30) with probability 1/3 each
 GEE 5.73 2.347 2.343 0.308 0.308 0.532 0.466 0.308 0.309 0.0 0.0 0.0 0.0
 IPW 5.73 0.622 0.623 0.303 0.303 0.317 0.317 0.323 0.323 50.7 50.7 52.1 52.1
 AUG 5.73 0.215 0.215 0.222 0.222 0.230 0.230 0.232 0.232 85.1 85.1 85.2 85.2
   DR 5.73 0.037 0.026 0.259 0.260 0.252 0.253 0.254 0.255 94.6 95.3 94.6 95.4
Marginal model for the GEE:
μij(β,Ai)=β0+βAAi
OM in AUG and DR is fitted for each treatment group using a stepwise regression:
Bij(Xi,Ai=a)=stepwise(EMPij,MARIij,AGEij,RELij,CAGEij,HIVij,CDMij,X1 ij,X2 ij,X3 ij)
PS in IPW and DR is fitted for the whole dataset using a stepwise regression:
logit(πij(Xi,Ai))=stepwise(Ai,EMPij,MARIij,AGEij,RELij,CAGEij,HIVij,CDMij,X1 ij,X2 ij,X3 ij)