Table 1. Alignment of the analogous imidacloprid binding residues in four imidacloprid metabolizing enzymes: CYP6ER1, CYP6CM1, CYP3A4, CYP6G1.
CYP6ER1 | CYP6CM1 | CYP3A4 | CYP6G1 | SRS location | Secondary structure |
---|---|---|---|---|---|
124Phe | 130Phe | 98Ser | 124Phe | SRS-1 | Loop between helices B and C |
288Asp | 224PHe | 190Leu | 218Phe | SRS-2 | Loop between helices F and F’ |
289Pro | 225Arg | 191Arg | 219Thr | SRS-2 | Loop between helices F and F’ |
290Asp | 226Phe | 192Phe | 220Phe | SRS-2 | Loop between helices F and F’ |
246Phe | 251Ala | 219Val | 245Phe | SRS-3 | Loop between helices G’ and G |
247Thr | 252Val | 220Phe | 246Phe | SRS-3 | Loop between helices G’ and G |
312Leu | 321Ser | 283Phe | 311Thr | SRS-4 | Helix I (O2 binding motif) |
313Ala | 322Ala | 284Ala | 312Ala | SRS-4 | Helix I (O2 binding motif) |
314Gly | 323Gly | 285Gly | 313Gly | SRS-4 | Helix I (O2 binding motif) |
317Thr | 326Pro | 288Thr | 316Thr | SRS-4 | Helix I (O2 binding motif) |
374Gly | 387Ala | 348ILe | 377Val | SRS-5 | Loop between helix K and b-strand |
375Pro | 388Ser | 349Ala | 378Leu | SRS-5 | Loop between helix K and b-strand |
376Val | 389Gly | 350Met | 379Pro | SRS-5 | Loop between helix K and b-strand |
487Thr | 501Ser | 460Gly | 497Gly | SRS-6 | C-terminal loop |
488Phe | 502Phe | 461Gly | 498Phe | SRS-6 | C-terminal loop |
489Val | 503Thr | 462Leu | 499Val | SRS-6 | C-terminal loop |
Analyses were based on structure sequence alignment between the CYP6CM1 model and the CYP3A4 crystallographic structure together with sequence alignment to CYP6G1. Some of the residues that contribute to the stabilization of imidacloprid in the active site are also important in the stabilization of the heme and oxygen molecules.