Table 3.

Pairwise comparisons of genome-wide DNA identity (upper right) and number of proteins with coding variations (lower left) in HSV-1 strains.

# of proteins with coding variations*	Percent pair-wise DNA identity →
	Strains	17	KOS79	KOS63	KOSDavido	KOSLarge	KOSKinchington	KOSKnipe	KOS1.1
	17		98.3%	98.4%	99.0%	98.3%	98.5%	98.9%	98.7%
	KOS79	57		98.4%	98.1%	98.6%	98.4%	98.1%	98.1%
	KOS63	61	65		99.2%	99.3%	99.2%	99.1%	99.1%
	KOSDavido	61	65	4		99.0%	99.3%	99.6%	99.7%
	KOSLarge	63	65	7	10		99.6%	99.1%	99.0%
	KOSKinchington	61	65	3	2	9		99.3%	99.2%
	KOSKnipe	61	65	5	4	11	3		98.9%
	KOS1.1	61	65	2	5	8	4	6

^*See Supplementary Table 2 for a list of specific proteins that vary between each pair of strains.