Table 1. SAXS-derived parameters for NLRP1(227–990).
Data-collection Parameters | ||
Instrument | SEC-SAXS at B21 Diamond Light source | |
SEC column | Superdex 200 (GE Healthcare) | |
q range (Å-1) | 0.0022–0.42 | |
Temperature (°C) | 25°C | |
Sample Concentration (before SEC) | 2mg/mL | 6mg/mL |
Structural parameters | ||
I(0) (cm-1/absorbance) [from P(r)] | 0.0018±0.0001 | 0.0067±0.0002 |
Rg (Å) [from P(r)] | 34.6±0.4 | 35.0±0.1 |
I(0) (cm-1/absorbance) (from Guinier) | 0.0018±0.0001 | 0.0066±0.0002 |
Rg (Å) (from Guinier) | 34.1±0.4 | 34.8±0.2 |
Dmax (Å) | 114 | 115 |
Porod Volume estimate (Å3) | 139208 | 127250 |
χ2 a | 0.96 | 1.02 |
Normalised Spatial Discrepancy | 0.57±0.03 | 0.61±0.03 |
SAXS derived Molecular Mass | ||
From Porod Volume (VPorod/1.6) (Da) | 87000 | 79000 |
SAXSMoW (Da)b | 101000 | 98000 |
From BSA as standard | 99000 | 91000 |
Molecular mass from sequence (kDa) | 89.5 | |
Software employed | ||
Primary data reduction | SCATTER | |
Data processing | ATSAS | |
Ab initio analysis | DAMMIF | |
Validation and averaging | DAMAVER | |
Computation of model intensities | CRYSOL | |
Three-dimensional graphic representation | PyMOL |
avalue derived from best DAMMIF model