Table 4.
Quantitative trait loci (QTL) for pre-harvest sprouting resistance identified in only one of the experiments conducted in the spring 2012 (2012S) and spring 2013 (2013S) greenhouse experiments and the 2013 Manhattan field experiment (2013MH)
| Chromosome | Marker name | Marker type | Chromosome position (cM)a | Positive allele frequency | p | R 2 (%)b | Experiment |
|---|---|---|---|---|---|---|---|
| 2B.1 | Excalibur_c1787_1199 | 90K | 7.97 | 0.81 | 2.97E-04 | 7.4 | 2013S |
| 2B.1 | BS00044806_51 | 90K | 10.24 | 0.72 | 4.98E-04 | 6.9 | 2013S |
| 2B.1 | Tdurum_contig51145_476 | 90K | 10.24 | 0.76 | 3.65E-04 | 7.2 | 2013S |
| 2B.1 | BS00022203_51 | 90K | - | 0.17 | 7.08E-04 | 6.5 | 2013S |
| 2B.1 | Excalibur_c3524_318 | 90K | - | 0.81 | 7.05E-04 | 6.5 | 2013S |
| 2B.1 | Kukri_c16758_443 | 90K | 10.24 | 0.73 | 1.31E-04 | 8.3 | 2013S |
| 2B.1 | wsnp_JD_c3288_4296662 | 9K | 10.24 | 0.77 | 7.57E-04 | 6.4 | 2013S |
| 2B.1 | BS00065556_51 | 90K | - | 0.77 | 2.56E-04 | 7.6 | 2013S |
| 2B.2 | wsnp_Ex_c13865_21720466 | 9K | 83.07 | 0.42 | 6.42E-04 | 6.6 | 2012S |
| 2B.2 | wsnp_RFL_Contig3273_3319580 | 90K | 83.07 | 0.41 | 7.30E-04 | 6.4 | 2012S |
| 2B.2 | RAC875_c26697_589 | 90K | 83.07 | 0.35 | 4.27E-04 | 7.0 | 2012S |
| 2B.2 | Tdurum_contig28795_322 | 90K | - | 0.41 | 7.63E-04 | 6.4 | 2012S |
| 6B.1 | RAC875_c23251_624 | 90K | 43.28 | 0.89 | 2.59E-05 | 9.4 | 2013MH |
| 6B.1 | BS00066799_51 | 90K | 43.28 | 0.92 | 7.13E-05 | 8.3 | 2013MH |
| 6B.1 | CAP8_c1361_367 | 90K | 43.28 | 0.89 | 2.59E-05 | 9.4 | 2013MH |
aThe positions of markers on W7984 reference sequence
bPhenotypic variance explained by a marker that was significantly associated with pre-harvest sprouting resistance