Table 4.
Genome statistics
| Strain | E75 | E78 | ||
|---|---|---|---|---|
| Attribute | Value | % of Totala | Value | % of Totala |
| Genome size (bp) | 5,032,328 | 100.00 | 5,021,201 | 100.00 |
| DNA coding (bp) | 4,466,253 | 88.75 | 4,348,152 | 86.60 |
| DNA G + C (bp) | 2,537,751 | 50.43 | 2,525,290 | 50.29 |
| DNA scaffolds | 463 | na | 60 | na |
| Total genes | 4666 | 100.00 | 4839 | 100.00 |
| Protein coding genes | 4581 | 98.18 | 4743 | 98.02 |
| RNA genes | 85 | 1.82 | 96 | 1.98 |
| Pseudo genes | 0 | 0 | 0 | 0 |
| Genes in internal clusters | na | na | na | na |
| Genes with function prediction | 3290 | 70.51 | 3401 | 70.28 |
| Genes assigned to COGs | 3496 | 74.92 | 3603 | 74.46 |
| Genes with Pfam domains | 2067 | 44.30 | 2233 | 46.15 |
| Genes with signal peptides | 361 | 7.74 | 374 | 7.73 |
| Genes with transmembrane helices | 1083 | 23.21 | 1114 | 23.02 |
| CRISPR repeats | 6 | 5 | ||
aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome