Table 2. Information on partial segment S1 sequenced from fish samples collected in Alaska, British Columbia and Washington State.
Ten types of identical sequences have been identified and grouped in five clusters.
| Clusters | Types | GenBank ID | Name | Host species (common name) | Collection Date | Tissue | Location (State, Country) |
|---|---|---|---|---|---|---|---|
| Cluster 1 (C1) | BCJ31915 | KR558677 | BC131_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) |
| KR781117 | BC1310_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR781118 | BC1311_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR558678 | BC132_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR558679 | BC133_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR558680 | BC134_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR558681 | BC135_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR558682 | BC136_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR558683 | BC137_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR558684 | BC138_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR558685 | BC139_13 | Farmed Salmo salar (Atlantic salmon) | May-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR872637 | BC361_14 | Farmed Salmo salar (Atlantic salmon) | May-14 | Heart | Hatchery (British Columbia, Canada) | ||
| BC362_14 | Farmed Salmo salar (Atlantic salmon) | May-14 | Heart | Hatchery (British Columbia, Canada) | |||
| BC363_14 | Farmed Salmo salar (Atlantic salmon) | May-14 | Heart | Hatchery (British Columbia, Canada) | |||
| BC364_14 | Farmed Salmo salar (Atlantic salmon) | May-14 | Heart | Hatchery (British Columbia, Canada) | |||
| BC365_14 | Farmed Salmo salar (Atlantic salmon) | May-14 | Heart | Hatchery (British Columbia, Canada) | |||
| BC366_14 | Farmed Salmo salar (Atlantic salmon) | May-14 | Heart | Hatchery (British Columbia, Canada) | |||
| BC367_14 | Farmed Salmo salar (Atlantic salmon) | May-14 | Heart | Hatchery (British Columbia, Canada) | |||
| BC368_14 | Farmed Salmo salar (Atlantic salmon) | May-14 | Heart | Hatchery (British Columbia, Canada) | |||
| KR347084 | BCJ24201_13 | Farmed Salmo salar (Atlantic salmon) | Sep-13 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR347085 | BCJ28529_13 | Farmed Salmo salar (Atlantic salmon) | Apr-13 | Heart | DFO area 7 (British Columbia, Canada) | ||
| KR347086 | BCJ28537_13 | Farmed Salmo salar (Atlantic salmon) | Apr-13 | Heart | DFO area 7 (British Columbia, Canada) | ||
| KR347087 | BCJ28545_13 | Farmed Salmo salar (Atlantic salmon) | Apr-13 | Heart | DFO area 7 (British Columbia, Canada) | ||
| KR347088 | BCJ31910_13 | Farmed Salmo salar (Atlantic salmon) | Oct-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347089 | BCJ31914_13 | Farmed Salmo salar (Atlantic salmon) | Oct-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347090 | BCJ31915_13 | Farmed Salmo salar (Atlantic salmon) | Oct-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347091 | BCJ31916_13 | Farmed Salmo salar (Atlantic salmon) | Oct-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347092 | BCJ31920_13 | Farmed Salmo salar (Atlantic salmon) | Oct-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347094 | BCJ35240_13 | Farmed Salmo salar (Atlantic salmon) | Nov-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347096 | BCJ35249_13 | Farmed Salmo salar (Atlantic salmon) | Nov-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347098 | BCJ35256_13 | Farmed Salmo salar (Atlantic salmon) | Nov-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347095 | BCJ35246_13 | Farmed Salmo salar (Atlantic salmon) | Nov-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347097 | BCJ35255_13 | Farmed Salmo salar (Atlantic salmon) | Nov-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347100 | BCJ40723_13 | Farmed Salmo salar (Atlantic salmon) | Nov-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347102 | BCJ40740_13 | Farmed Salmo salar (Atlantic salmon) | Nov-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347101 | BCJ40731_13 | Farmed Salmo salar (Atlantic salmon) | Nov-13 | Heart | Hatchery (British Columbia, Canada) | ||
| KR347105 | BCJ402256_13 | Wild Oncorhynchus kisutch (Coho salmon) | Nov-13 | Heart | Quinsam Hatchery (British Columbia, Canada) | ||
| KR347112 | BCK14114_14 | Farmed Salmo salar (Atlantic salmon) | Apr-14 | Heart | DFO area 27 (British Columbia, Canada) | ||
| KR347113 | BCK14120_14 | Farmed Salmo salar (Atlantic salmon) | Apr-14 | Heart | DFO area 27 (British Columbia, Canada) | ||
| KR347106 | BCJ402276_13 | Wild Oncorhynchus kisutch (Coho salmon) | Nov-13 | Heart | Quinsam Hatchery (British Columbia, Canada) | ||
| Cluster 2 (C2) | BCJ18824 | KR347081 | BCJ18824_13 | Wild Oncorhynchus tshawytscha (Chinook salmon) | Aug-13 | Heart | DFO area 127 (British Columbia, Canada) |
| KR347083 | BCJ19943_13 | Wild Oncorhynchus kisutch (Coho salmon) | Aug-13 | Heart | DFO area 127 (British Columbia, Canada) | ||
| KR347093 | BCJ34056_13 | Wild Oncorhynchus kisutch (Coho salmon) | Oct-13 | Heart | Quinsam Hatchery (British Columbia, Canada) | ||
| KR347103 | BCJ378151_13 | Wild Oncorhynchus kisutch (Coho salmon) | Nov-13 | Heart | Quinsam Hatchery (British Columbia, Canada) | ||
| Cluster 3 (C3) | BCJ19323 | KR347082 | BCJ19323_13 | Wild Oncorhynchus kisutch (Coho salmon) | Aug-13 | Heart | DFO area 7 (British Columbia, Canada) |
| KR347104 | BCJ378241_13 | Wild Oncorhynchus kisutch (Coho salmon) | Nov-13 | Heart | Quinsam Hatchery (British Columbia, Canada) | ||
| KR347099 | BCJ37896_13 | Wild Oncorhynchus kisutch (Coho salmon) | Nov-13 | Heart | Quinsam Hatchery (British Columbia, Canada) | ||
| KR347110 | BCK1562_14 | Wild Oncorhynchus kisutch (Coho salmon) | May-14 | Heart | Quinsam Hatchery (British Columbia, Canada) | ||
| KR347115 | BCK15625_14 | Wild Oncorhynchus kisutch (Coho salmon) | May-14 | Heart | Quinsam Hatchery (British Columbia, Canada) | ||
| KR347111 | BCK1566_14 | Wild Oncorhynchus kisutch (Coho salmon) | May-14 | Heart | Quinsam Hatchery (British Columbia, Canada) | ||
| KR478634 | WS1209_12 | Wild Oncorhynchus tshawytscha (Chinook salmon) | Sep-12 | Pool of gill, heart and kidney | Columbia River (Washington State, US) | ||
| KR478637 | WSKFH11_14 | Wild Oncorhynchus kisutch (Coho salmon) | Mar-14 | Blood | Columbia River (Washington State, US) | ||
| KR478639 | WSKFH13_14 | Wild Oncorhynchus kisutch (Coho salmon) | Mar-14 | Blood | Columbia River (Washington State, US) | ||
| KR478636 | WSKFH2_14 | Wild Oncorhynchus kisutch (Coho salmon) | Mar-14 | Blood | Columbia River (Washington State, US) | ||
| KR478633 | WS1207_12 | Wild Oncorhynchus tshawytscha (Chinook salmon) | Sep-12 | Pool of gill, heart and kidney | Columbia River (Washington State, US) | ||
| Cluster 4 (C4) | BCA1338 | KR478642 | BCA1338_01 | Wild Oncorhynchus tshawytscha (Chinook salmon) | May-01 | Multiple Organs | DFO Area 13 (British Columbia, Canada) |
| KR478643 | BCA1846_01 | Farmed Salmo salar (Atlantic salmon) | Aug-01 | Multiple Organs | DFO Area 18 (British Columbia, Canada) | ||
| KR478644 | BCA1848_01 | Farmed Salmo salar (Atlantic salmon) | Aug-01 | Multiple Organs | DFO Area 18 (British Columbia, Canada) | ||
| KR347078 | BCA1849_01 | Farmed Salmo salar (Atlantic salmon) | Aug-01 | Multiple Organs | DFO Area 18 (British Columbia, Canada) | ||
| KR347079 | BCA1850_01 | Farmed Salmo salar (Atlantic salmon) | Aug-01 | Multiple Organs | DFO Area 18 (British Columbia, Canada) | ||
| KR347080 | BCA1854_05 | Farmed Salmo salar (Atlantic salmon) | Mar-05 | Head kidney, trunk kidney, liver and spleen | DFO Area 18 (British Columbia, Canada) | ||
| KR347107 | BCJ402334_13 | Wild Oncorhynchus kisutch (Coho salmon) | Nov-13 | Heart | Quinsam Hatchery (British Columbia, Canada) | ||
| KR347109 | BCK1436_14 | Salmo salar (Atlantic salmon) | Apr-14 | Heart | DFO area 12 (British Columbia, Canada) | ||
| Cluster (C5) | AKJ20115 | KR478640 | AKJ20115_13 | Wild Oncorhynchus kisutch (Coho salmon) | Aug-13 | Heart | Copper River (Alaska, US) |
| KR478641 | AKJ20120_13 | Wild Oncorhynchus kisutch (Coho salmon) | Aug-13 | Heart | Copper River (Alaska, US) | ||
| KR872635 | BCINOC3_13 | Wild Oncorhynchus tshawytscha (Chinook salmon) | May-13 | DFO area 124 (British Columbia, Canada) | |||
| KR478635 | WSKFH1_14 | Wild Oncorhynchus kisutch (Coho salmon) | Mar-14 | Blood | Columbia River (Washington State, US) | ||
| KR478638 | WSKFH12_14 | Wild Oncorhynchus kisutch (Coho salmon) | Mar-14 | Blood | Columbia River (Washington State, US) | ||
| KR347108 | BCK1435_14 | Farmed Salmo salar (Atlantic salmon) | Apr-14 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR347114 | BCK14310_14 | Farmed Salmo salar (Atlantic salmon) | Apr-14 | Heart | DFO area 12 (British Columbia, Canada) | ||
| KR872636 | BCINOC12_13 | Wild Oncorhynchus tshawytscha (Chinook salmon) | May-13 | DFO area 124 (British Columbia, Canada) |