Table 2. General genetic diversity indices for 14 a posteriori wild boar subpopulations, based on 11 microsatellite markes.

Population	2n	Ne	Allele number	Allele richness (rarefied)	Private alleles (rarefied)	Ho	He	FIS	Loci in HWD (out of 11)	LD (pair loci/55)
Dinaric Balkans	136	85.2	115	7.2	0.342	0.740	0.780	0.045	2	5
Peridinaric Balkans	52	48.4	97	7.2	0.221	0.720	0.770	0.065	2	2
Cont. Balkans and East. Europe	250	129.3	135	7.6	0.083	0.690	0.760	0.089	3	5
South Central Balkans	66	57.4	107	7.7	0.362	0.720	0.790	0.092	2	3
Littoral Slovenia	34	25.5	53	4.2	0.219	0.500	0.580	0.136	1	1
Castel Porziano	38	23.6	44	3.5	0.028	0.440	0.460	0.041	0	2
Central-western Italy	56	52.4	87	6.4	0.295	0.640	0.720	0.121	3	2
North-western Italy	114	86.5	119	7.2	0.383	0.710	0.740	0.044	1	3
Alps	240	99.2	144	7.7	0.437	0.700	0.790	0.113	5	14
Sardinia	32	22.0	53	4.4	0.155	0.660	0.650	−0.015	0	1
North-western Iberia	84	93.1	89	6.5	0.309	0.710	0.750	0.053	3	2
Central South Iberia	140	93.8	123	7.9	0.320	0.650	0.790	0.174	2	13
South Portugal	38	49.4	65	5.0	0.231	0.560	0.630	0.098	1	0
Central Europe	166	223.1	124	7.7	0.234	0.690	0.750	0.082	2	6

Abbreviations: F_IS, inbreeding coefficient; H_E, expected heterozygosity; H_O, observed heterozygosity; HWD, Hardy–Weinberg disequilibrium; LD, linkage disequilibrium; 2n, number of gene copies; N_e, effective population size.

Statistically significant values (P<0.01) are in bold.