Table 3. Comparison of 3D genome browsers.
| Web server or software | Hi-C heatmap display | Annotation tracks | Gene search | Disease search | GWAS variants search | 3D model display | PubMed ID | Website |
|---|---|---|---|---|---|---|---|---|
| 3Disease Browser | ✓ | ✓ | ✓ | ✓ | ✓ | — | http://3dgb.cbi.pku.edu.cn/disease | |
| ChromContact | ✓ | ✓ | ✓ | 26666652 | http://bioinfo.sls.kyushu-u.ac.jp/chromcontact/ | |||
| HiView | ✓ | ✓ | ✓ | ✓ | 26969411 | http://www.unc.edu/~yunmli/HiView/ | ||
| Hi-C data Browser (Dekker lab) | ✓ | — | http://hic.umassmed.edu/welcome/welcome.php | |||||
| HiC-3DViewer | ✓ | ✓ | ✓ | — | http://bioinfo.au.tsinghua.edu.cn/member/nadhir/HiC3DViewer | |||
| Hi-C data Browser (Yue lab) | ✓ | ✓ | — | http://yuelab.org/hi-c/database.php | ||||
| WashU EpiGenome Browser (Wang lab) | ✓ | ✓ | ✓ | ✓ | 23629413 | http://vizhub.wustl.edu/ | ||
| Juicebox (Lieberman- Aiden lab) | ✓ | ✓ | 25497547 | http://www.aidenlab.org/juicebox/ | ||||
| 4DGenome Browser | ✓ | ✓ | 25788621 | http://4dgenome.int-med.uiowa.edu | ||||
| Genomic HyperBrowser | ✓ | 21182759 | https://hyperbrowser.uio.no/hb/ | |||||
| GMOL | ✓ | 26868282 | https://sourceforge.net/projects/gmol/ | |||||
| Genome3D | ✓ | 25348407 | http://www.genome3d.eu | |||||
| Tadkit | ✓ | ✓ | — | http://sgt.cnag.cat/3dg/tadkit/ |