Table 3.
Task 1.1 | MAF | |||||||||
311 SNPs | 610 SNPs | 311 SNPs | 610 SNPs | |||||||
Time | Memory | Time | Memory | Time | Memory | Time | Memory | |||
Microsoft | 17.44 s | 130.48 MB | 26.31 s | 247.30 MB | 16.88 s | 118.08 MB | 27.11 s | 234.73 MB | ||
UCIa | 0.589 s | 3.320 MB | 0.886 s | 3.320 MB | 0.659 s | 3.320 MB | 0.871 s | 3.320 MB | ||
Stanford/MIT | 1.069 s | 8.0 MB | 1.847 s | 13.0 MB | 1.069 s | 8.0 MB | 1.847 s | 13.0 MB | ||
U of Tsukuba | 55.20s | 31.81 MB | 112.32 s | 32.67 MB | 55.21 s | 31.81 MB | 112.32 s | 32.67 MB | ||
Task 1.2 (a) | 5 k | 10 k | 100 k | |||||||
Accuracy | Time | Memory | Accuracy | Time | Memory | Accuracy | Time | Memory | ||
Plaintext data | 3099 | 0.076 s | 1.64 MB | 3306 | 0.118 s | 2.43 MB | 134252 | 134252 | 13.52 MB | |
IBM | 3099 | 79.4 s | 1.416 GB | 3306 | 86.8 s | 1.419 GB | 134260 | 134260 | 2.168 G | |
Microsoft | 3099 | 44.664 s | 513.7 MB | 3306 | 80.031 s | 720.5 MB | ||||
Stanford/MIT | 3082 | 20m37s | 2.77 GB | 3275 | 36m27s | 4.03 GB | 132703 | 132703 | 7.50 GB | |
Task 1.2 (b) | 5 k | 10 k | 100 k | |||||||
Accuracy | Time | Memory | Accuracy | Time | Memory | Accuracy | Time | Memory | ||
Plaintext data | 9089 | 0.106 s | 2.45 MB | 16667 | 0.144 s | 2.53 MB | 191986 | 1.528 s | 25.8 MB | |
IBMb | 5328 | 91.7 s | 1.42 GB | 8318 | 106.3 s | 1.45 GB | 153266 | 555.2 s | 2.29 GB | |
Microsoft | 9089 | 91.09 s | 701 MB | 16665 | 181.92 s | 1.29 GB |
aThe algorithm encrypts local counts instead of input data for secure data outsourcing, and was disqualified in the competition
bAn approximate algorithm (with about 22 % error), which was not considered in the competition
Winners are in boldface