Table 2. Bacterial community α diversity within atherosclerotic plaque samples.
Sample | Number of reads without chimeras | Number of rarefied reads | Observed OTUs | Phylogenetic diversity | Chao 1 index | Shannon index | Simpson index |
---|---|---|---|---|---|---|---|
ap01 | 6,376 | 5,566 | 298 | 8.66 | 413.94 | 5.23 | 0.92 |
ap02 | 6,890 | 5,505 | 269 | 9.86 | 335.07 | 4.73 | 0.88 |
ap03 | 6,289 | 5,527 | 265 | 11.05 | 299.92 | 4.88 | 0.87 |
ap04 | 6,325 | 5,474 | 239 | 9.02 | 310.50 | 5.21 | 0.93 |
ap05 | 8,166 | 5,448 | 296 | 8.44 | 350.01 | 4.90 | 0.87 |
ap06 | 11,479 | 5,492 | 319 | 7.60 | 444.67 | 4.45 | 0.83 |
ap07 | 13,841 | 5,513 | 308 | 8.24 | 382.17 | 5.73 | 0.95 |
ap08 | 8,534 | 5,483 | 253 | 8.68 | 306.63 | 4.54 | 0.85 |
ap09 | 5,552 | 5,552 | 258 | 8.98 | 317.38 | 4.41 | 0.84 |
ap10 | 5,637 | 5,516 | 283 | 8.25 | 362.33 | 5.13 | 0.92 |
ap11 | 7,184 | 5,547 | 171 | 7.85 | 256.55 | 3.14 | 0.73 |
ap12 | 8,608 | 5,565 | 139 | 7.18 | 194.65 | 3.00 | 0.73 |
ap13 | 6,856 | 5,452 | 175 | 11.22 | 222.53 | 3.90 | 0.80 |
ap14 | 7,912 | 5,612 | 183 | 8.48 | 234.11 | 3.48 | 0.78 |
ap15 | 10,781 | 5,530 | 162 | 9.60 | 231.79 | 3.09 | 0.72 |
ap16 | 9,878 | 5,429 | 165 | 9.65 | 206.13 | 3.16 | 0.73 |
ap17 | 7,833 | 5,528 | 178 | 10.07 | 252.25 | 3.42 | 0.76 |
ap18 | 8,337 | 5,457 | 176 | 8.81 | 227.85 | 3.16 | 0.73 |
ap19 | 9,964 | 5,468 | 201 | 9.72 | 250.11 | 3.78 | 0.82 |
ap20 | 7,332 | 5,487 | 169 | 9.93 | 222.01 | 3.48 | 0.78 |
ap21 | 8,636 | 5,541 | 173 | 8.10 | 207.03 | 3.48 | 0.77 |
ap22 | 10,903 | 5,451 | 180 | 7.09 | 247.20 | 3.49 | 0.77 |
ap23 | 10,657 | 5,513 | 173 | 7.89 | 224.04 | 3.84 | 0.81 |
ap24 | 10,808 | 5,559 | 182 | 9.01 | 225.97 | 3.66 | 0.79 |
ap25 | 12,777 | 5,510 | 156 | 7.92 | 215.63 | 3.24 | 0.75 |
ap26 | 13,030 | 5,535 | 177 | 8.77 | 253.96 | 3.59 | 0.78 |
ap27 | 8,215 | 5,541 | 159 | 9.15 | 198.60 | 3.39 | 0.76 |
ap28 | 11,076 | 5,627 | 168 | 9.90 | 194.56 | 3.74 | 0.81 |