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. 2016 Oct 14;6:35442. doi: 10.1038/srep35442

Table 2. Important up-regulated genes in MRSA1679a during differential expression analysis.

Gene/ORF Gene product P-value Fold change
Virulence
icaA intercellular adhesion protein A 4.32E-05 9.12
icaB intercellular adhesion protein B 0.049359 3.12
icaC intercellular adhesion protein C 0.042855 3.44
icaD intercellular adhesion protein D 0.019102 5.35
sdrE sdrE protein 0.000141 5.59
eno phosphopyruvate hydratase 0.014628 2.85
ureB urease subunit beta 0.002621 4.16
ureC urease subunit alpha 0.000846 4.52
ureD urease accessory protein UreD 0.00663 3.34
ureE urease accessory protein UreE 0.002252 4.13
ureF urease accessory protein UreF 0.002263 4.05
ureG urease accessory protein UreG 0.001419 4.26
cap5A capsular polysaccharide biosynthesis proteinCap5A 2.05E-06 8.65
cap5B capsular polysaccharide biosynthesis proteinCap5B 8.29E-06 7.46
cap5C capsular polysaccharide biosynthesis proteinCap5C 4.07E-05 6.23
cap5D capsular polysaccharide biosynthesis proteinCap5D 6.79E-05 5.83
cap5E capsular polysaccharide biosynthesis proteinCap5E 0.00033 4.97
cap5F capsular polysaccharide synthesis enzyme Cap5F 0.000144 5.52
cap5G UDP-N-acetylglucosamine 2-epimerase Cap5G 2.73E-05 6.75
cap5L capsular polysaccharide biosynthesis proteinCap5L 0.000208 5.41
cap5M capsular polysaccharide biosynthesis galactosyltransferase Cap5M 0.001864 4.11
cap5N capsular polysaccharide biosynthesis proteinCap5N 0.002776 3.86
SAAV_0581 heme binding proteins 0.036714 2.44
SAAV_0718 LysM domain-containing protein 2.50E-05 7.45
SAAV_1044 cell-wall binding lipoprotein 0.000758 4.73
SAAV_1071 manganese transport protein MntH 0.000538 4.71
SAAV_1144 anti-protein (phenol soluble modulin) 0.044331 2.30
SAAV_1145 anti-protein (phenol soluble modulin) 0.015271 2.76
SAAV_1785 N-acetylmuramoyl-L-alanine amidase 0.037926 2.67
SAAV_1946 phosphotyrosine protein phosphatase 0.036493 2.48
SAAV_2242 siderophore biosynthesis protein 0.029779 2.48
SAAV_2616 ferrous iron transport protein B 0.007373 3.59
SAAV_2631 heme binding proteins 0.005153 3.45
Regulator
kdpD sensor histidine kinase KdpD 0.017446 2.91
kdpE DNA-binding response regulator KdpE 0.049855 2.49
sarA accessory regulator A 0.018333 2.71
thyA thymidylate synthase 0.046559 2.34
Resistance
ermC rRNA adenine N-6-methyltransferase 0.000213 1500
SAAV_1916 multidrug ABC transporter, permease 0.013189 3.16
Stress
cysK cysteine synthase 0.013471 3.00
trxA thioredoxin 0.013116 2.87
proP osmoprotectant proline transporter 0.00601 3.44
budA1 alpha-acetolactate decarboxylase 4.74E-07 10.56
budB acetolactate synthase 2.34E-05 6.90
SAAV_0149 membrane protein YagU 0.004216 3.52
SAAV_1344 ImpB/MucB/SamB family protein 0.000756 4.81
SAAV_1732 OsmC/Ohr family protein 0.010857 3.14
Prophage
SAAV_0833 Siphovirus Gp157 2.28E-24 943.00
SAAV_0834 phage single-strand DNA binding protein 3.48E-06 9.28
SAAV_0838 phage replication protein 5.81E-05 6.94
SAAV_0844 conserved hypothetical phage protein 0.001692 4.59