Fig. 5.

Performing BETA-plus analysis. Select the track containing the ChIP-seq data, select the track containing the transcriptomic data, select the type of gene ID used (RefSeq or gene symbol), input the prefix for output files, select the genome build, select the type of transcriptomic data (i.e., the format of the track selected earlier), if the transcriptomic data is in a custom format insert a comma-separated list of numbers referencing which column is the gene ID, the direction of expression change and the significance measure (e.g., if this was a track with three columns, the first of which was the gene ID, the second of which was the log₂ fold change and the third of which was the FDR, this would be 1,2,3). Finally select “Execute”