Table 1.

Summary of gene counts

Cluster	Genes	Statistically significant temporal trend (q-value ≤ 0.001)		Minimum of twofold change between any two time points (FC≥2)		Differentially expressed (q-value ≤0.001 and FC≥2)		Sustained response (minimum of twofold change at final time point)	Strength of long-term response (smallest final expression change for the cluster)	Description of the response
		Count	Proportion	Count	Proportion	Count	Proportion
1	5	5	1.00	5	1.00	5	1.00	5	22.73	Sustained induction
2	8	8	1.00	8	1.00	8	1.00	8	13.62	Sustained induction
3	11	11	1.00	11	1.00	11	1.00	11	20.03	Sustained induction
4	63	63	1.00	63	1.00	63	1.00	63	4.83	Sustained induction
5	37	37	1.00	37	1.00	37	1.00	37	4.03	Sustained induction
6	100	100	1.00	100	1.00	100	1.00	100	4.38	Sustained induction
7	356	337	0.95	350	0.98	331	0.93	350	1.87	Sustained induction
8	345	307	0.89	250	0.72	239	0.69	191	1.11	Sustained induction
9	336	239	0.71	190	0.57	162	0.48	114	1.37	Sustained induction
10	182	178	0.98	182	1.00	178	0.98	132	1.43	Sustained induction
11	50	48	0.96	50	1.00	48	0.96	3	1.01	Transient induction
12	538	285	0.53	121	0.22	100	0.19	0	1.00	Transient induction
13	1876	161	0.09	1	0.00	0	0.00	0	1.00	No change
14	311	222	0.71	177	0.57	157	0.50	131	1.01	Sustained repression
15	372	311	0.84	241	0.65	226	0.61	137	1.36	Sustained repression
16	1123	760	0.68	473	0.42	450	0.40	473	1.33	Sustained repression
17	62	61	0.98	62	1.00	61	0.98	60	1.97	Sustained repression
18	368	366	0.99	368	1.00	366	0.99	368	3.45	Sustained repression
19	7	7	1.00	7	1.00	7	1.00	7	4.61	Sustained repression
20	41	41	1.00	41	1.00	41	1.00	41	8.66	Sustained repression
Simple total	6191	3547	0.57	2737	0.44	2590	0.42	2231
Unique total	6088	3493	0.57	2688	0.44	2549	0.42	2186

Genes in the FSR are shaded. As some genes occur in multiple clusters, the total number of unique genes in the data set in addition to a simple total of the counts in each cluster is provided.