Table 1. Crystallographic Data Collection and Refinement Statistics for Cas9-sgRNA-PAM DNA Complexes.
Dataset (Cas9) | VQR | EQR | VRER |
---|---|---|---|
PAM sequence | NGAG | NGAG | NGCG |
X-ray source | SLS PXIII | SLS PXIII | SLS PXIII |
Space group | C2 | C2 | C2 |
Cell dimensions | |||
a, b, c (Å) | 176.6, 67.0, 187.2 | 177.7, 68.2, 188.2 | 177.5, 67.8, 187.7 |
α, β, γ (°) | 90.0, 111.1, 90.0 | 90.0, 110.9, 90.0 | 90.0, 111.1, 90.0 |
Wavelength (Å) | 1.00000 | 1.00000 | 1.00000 |
Resolution (Å)* | 47.62–2.50 (2.65–2.50) | 48.25–2.68 (2.75–2.68) | 47.98–2.70 (2.77–2.70) |
Rsym (%)* | 9.6 (77.0) | 12.3 (77.4) | 12.7 (89.5) |
I/σI* | 11.9 (1.7) | 13.2 (2.2) | 13.2 (1.9) |
Completeness (%)* | 99.4 (98.2) | 99.3 (91.7) | 99.9 (100.0) |
Redundancy* | 3.5 (3.6) | 7.0 (6.5) | 7.0 (6.6) |
Refinement | |||
Resolution (Å) | 47.62–2.50 | 48.25–2.68 | 47.98–2.70 |
No. reflections | 71,146 | 59,668 | 57,665 |
Rwork / Rfree | 0.218 / 0.254 | 0.205 / 0.236 | 0.218 / 0.247 |
No. atoms | |||
Macromolecules | 13,198 | 13,289 | 13,349 |
Ion | 15 | 15 | 15 |
Water | 264 | 130 | 85 |
B-factors | |||
mean | 52.5 | 47.6 | 55.7 |
Macromolecules | 52.7 | 47.7 | 55.7 |
Ion | 64.2 | 70.7 | 74.7 |
Water | 44.8 | 41.8 | 47.4 |
Rmsds | |||
Bond lengths (Å) | 0.014 | 0.004 | 0.004 |
Bond angles (°) | 0.82 | 0.79 | 0.88 |
Ramachandran plot | |||
% favored | 98.2 | 97.2 | 95.1 |
% allowed | 1.8 | 2.8 | 4.9 |
% outliers | 0.0 | 0.1 | 0.0 |
Molprobity | |||
Clashscore | 10.4 | 9.5 | 11.2 |
Values in parentheses denote highest resolution shell